Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_K16
         (494 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0307 + 2414709-2414762,2415769-2415841,2416090-2416154,241...    28   3.6  
07_03_1710 - 28903614-28903673,28904982-28905146,28905453-289056...    28   4.7  
07_01_0524 + 3892340-3894625,3894995-3895109,3895204-3895298,389...    27   8.3  

>03_01_0307 +
           2414709-2414762,2415769-2415841,2416090-2416154,
           2416288-2416365,2416880-2416999,2418021-2418091,
           2418808-2418900,2419242-2419311,2420236-2420436,
           2421345-2421557,2422354-2422440,2422441-2422652,
           2422901-2423042,2423424-2423592,2424050-2424126,
           2424393-2424563,2425095-2425171,2425299-2425401,
           2426066-2426185,2426301-2426444,2426826-2426975,
           2427398-2427541,2427816-2427903,2428672-2428799,
           2429329-2429533,2429843-2430015,2430174-2430392,
           2430490-2430684
          Length = 1213

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 71  KTIPQRILIEFTVQNTENQN*DFFYQRFQTMSVINIIEFKQL 196
           +TI  R LI   +     +N DF  +RF++  +  ++E +QL
Sbjct: 696 RTIDLRSLITQRMNKLFRENIDFLLERFESGDLCGVVELQQL 737


>07_03_1710 -
           28903614-28903673,28904982-28905146,28905453-28905638,
           28905784-28905927,28906281-28906460,28906559-28907215
          Length = 463

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 351 YYHPNSNDDNNMLNYKY 401
           Y H NSNDD++ML + Y
Sbjct: 332 YNHHNSNDDSDMLGHSY 348


>07_01_0524 + 3892340-3894625,3894995-3895109,3895204-3895298,
            3895929-3896167,3896524-3896610,3896967-3897066,
            3897908-3898115,3898224-3899422
          Length = 1442

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 64   IIKNNSSENSDRVYSPKHREPKLRFFLSEVSNNV 165
            I+ N+  +NS  V   +H   K + F+S V+NNV
Sbjct: 1228 IVGNHDIQNSVEVKGMEHNTAKDQTFVSAVANNV 1261


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,333,681
Number of Sequences: 37544
Number of extensions: 166674
Number of successful extensions: 376
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)