Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_K16
         (494 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81030-4|CAB02708.1|   89|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z81030-11|CAE17704.1|  100|Caenorhabditis elegans Hypothetical p...    27   5.7  
AC024202-3|AAF36038.2|  955|Caenorhabditis elegans C. elegans AP...    27   5.7  
AC024202-2|AAP86608.1|  226|Caenorhabditis elegans C. elegans AP...    27   5.7  
Z81030-14|CAJ43441.1|   75|Caenorhabditis elegans Hypothetical p...    27   7.5  

>Z81030-4|CAB02708.1|   89|Caenorhabditis elegans Hypothetical
           protein C01G10.6 protein.
          Length = 89

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 351 YYHPNSNDDNNMLNYKYGRIHSNLGNTSIT 440
           YY+PN+N++N    Y Y   + N GNT  T
Sbjct: 37  YYYPNNNNNNGQNTYYYD--NGNNGNTGTT 64


>Z81030-11|CAE17704.1|  100|Caenorhabditis elegans Hypothetical
           protein C01G10.15 protein.
          Length = 100

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
 Frame = +3

Query: 300 LITSFLLCFKRSPSSYLYYH-PNS----NDDNNMLNYKYGRIHSNLGNTSIT 440
           LI + L+ F  + + YLYY+ PN+    N++N    Y Y   ++N  N   T
Sbjct: 6   LIATLLVLFSTANAYYLYYYYPNNGYNNNNNNGYTTYYYYPNNNNNNNNGQT 57


>AC024202-3|AAF36038.2|  955|Caenorhabditis elegans C. elegans APB-1
           protein, isoform a protein.
          Length = 955

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 71  KTIPQRILIEFTVQNTENQN*DFFYQRFQTMSV 169
           K+IP++   +FT+QNT N N D    + Q  ++
Sbjct: 860 KSIPEQNEQQFTLQNTHNMNADAICTKLQQNNI 892


>AC024202-2|AAP86608.1|  226|Caenorhabditis elegans C. elegans APB-1
           protein, isoform b protein.
          Length = 226

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 71  KTIPQRILIEFTVQNTENQN*DFFYQRFQTMSV 169
           K+IP++   +FT+QNT N N D    + Q  ++
Sbjct: 131 KSIPEQNEQQFTLQNTHNMNADAICTKLQQNNI 163


>Z81030-14|CAJ43441.1|   75|Caenorhabditis elegans Hypothetical
           protein C01G10.17 protein.
          Length = 75

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +3

Query: 300 LITSFLLCFKRSPSSYLYYH-PNSNDDNN 383
           LI + L+ F  + + Y YY+ PN+N +NN
Sbjct: 6   LIATLLVLFAATDAYYTYYYYPNNNYNNN 34


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,916,534
Number of Sequences: 27780
Number of extensions: 179221
Number of successful extensions: 514
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)