Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_K15
         (543 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.02 |sft2||Golgi transport protein Sft2 |Schizosaccharom...    27   1.8  
SPBPB2B2.07c |||S. pombe specific DUF999 protein family 7|Schizo...    25   7.2  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    25   9.5  

>SPAC1527.02 |sft2||Golgi transport protein Sft2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 199 RLSSFSICSLRSLMCFAHSCIIF 267
           R   F IC L SL C+A +C +F
Sbjct: 67  RYMLFGICLLGSLACYAIACFMF 89


>SPBPB2B2.07c |||S. pombe specific DUF999 protein family
           7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 165

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 296 ALYICIL*TLLLGQVIVC*FSLQ 364
           A+YIC+   LLLG  ++C F LQ
Sbjct: 145 AIYICLFILLLLG--LICMFPLQ 165


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 426 SSNGGDVTFFLDRNTDYNRPTSRLIR*SV 512
           ++NG D++  L+ +   N+P S L++ SV
Sbjct: 767 ANNGDDISNALNTSRSENKPNSNLVQGSV 795


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,115,429
Number of Sequences: 5004
Number of extensions: 42721
Number of successful extensions: 85
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)