Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_K15
         (543 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70852-14|AAM98014.1|  783|Caenorhabditis elegans Gei-4(four) in...    27   8.7  
U70852-13|AAM98015.1|  788|Caenorhabditis elegans Gei-4(four) in...    27   8.7  
AC006748-4|AAF60512.2|  371|Caenorhabditis elegans Hypothetical ...    27   8.7  

>U70852-14|AAM98014.1|  783|Caenorhabditis elegans Gei-4(four)
           interacting proteinprotein 4, isoform a protein.
          Length = 783

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +3

Query: 231 ITDVFC--ALLYNFPRLTVHFTNKHCIFAYCKHYC*GKLLFVNFHYKLLH 374
           I +VF   +L  +   L    T+K+C F   +H+C G LL       +LH
Sbjct: 334 IVEVFLETSLSKSLANLKASATSKYCSFLQYRHWCYGSLLSRLVENGILH 383


>U70852-13|AAM98015.1|  788|Caenorhabditis elegans Gei-4(four)
           interacting proteinprotein 4, isoform b protein.
          Length = 788

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +3

Query: 231 ITDVFC--ALLYNFPRLTVHFTNKHCIFAYCKHYC*GKLLFVNFHYKLLH 374
           I +VF   +L  +   L    T+K+C F   +H+C G LL       +LH
Sbjct: 339 IVEVFLETSLSKSLANLKASATSKYCSFLQYRHWCYGSLLSRLVENGILH 388


>AC006748-4|AAF60512.2|  371|Caenorhabditis elegans Hypothetical
           protein Y39A3B.1 protein.
          Length = 371

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +1

Query: 214 SICSLRSLMCFAHSCIIFHD*QCTLRISTVYL-HTVNTTVRASYCL 348
           S+  L   +   HS   FH  Q +++I T+YL  T+N      YC+
Sbjct: 274 SLDRLHPFLYSDHSSFFFHSKQKSVQIPTIYLTDTLNLRGVRQYCV 319


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,529,827
Number of Sequences: 27780
Number of extensions: 234130
Number of successful extensions: 437
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)