Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_K12
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    28   1.1  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    28   1.4  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    25   7.6  
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p...    25   10.0 
SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom...    25   10.0 

>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 19/71 (26%), Positives = 30/71 (42%)
 Frame = -1

Query: 633 VLKTIWKGTVSTIKIETTLFPL*RHCFSYRNLIPSIIYL*SDRASLASLNYFFNTVHIVL 454
           V +  W  T+S I   ++   +      YR+L+     L  D     +LN + +   I  
Sbjct: 767 VNRRFWVQTLSDIGKGSSAIRIAEKYSDYRSLVELCYQLYEDNELTDALNNYLDLFGIKF 826

Query: 453 NYILYSVFVFN 421
            +ILY  FV N
Sbjct: 827 AFILYDYFVEN 837


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 21/80 (26%), Positives = 37/80 (46%)
 Frame = -2

Query: 392 KTLETMLCYVRKQNVGTTVVIPTFCFVQWNGLYEVSSELDINSVRFFNIIIKISDFC**R 213
           K +E  LCY    NV      P+F +V  + L +    L I  VR + I+++ +D    +
Sbjct: 532 KQIECYLCYTESSNVSNDEPHPSFEYV--SRLSQYIYLLRIALVRLYTILMENNDSSQRK 589

Query: 212 SDVKREKNDNIGSSWSTKQK 153
                 K +N+ S+  T ++
Sbjct: 590 PLSVDPKQENVSSTVETAKQ 609


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +3

Query: 99  FQLITKSLIS-CKRKIKCIFLFR*PRAAYVIILFAFDVTTSLTKVRYLYYNIKE 257
           F ++  ++ S C   IK  FLF       +++LF+F V     K+    YN K+
Sbjct: 323 FGIVVLAIFSYCNFGIKQFFLFAAVMIYDLLLLFSFFVAILTLKLEMRRYNAKD 376


>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 252

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 585 TTLFPL*RHCFSYRNLIPSIIY 520
           T ++PL  HCF  ++L+P + Y
Sbjct: 106 TKIYPL-PHCFIVKDLVPDLTY 126


>SPAC1F5.08c |yam8|ehs1|calcium transport
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
 Frame = -2

Query: 176 SSWSTKQKNAFY--FTLTRD*AFCNKLKWSXHEL 81
           + W  +Q   +Y  FT T D   CN   WS + L
Sbjct: 317 AEWYDQQAYGYYQNFTYTLDLIPCNATSWSAYSL 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,633,378
Number of Sequences: 5004
Number of extensions: 51584
Number of successful extensions: 94
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)