Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_K10
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...    36   0.005
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    27   2.5  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   7.7  
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    25   7.7  

>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 35.9 bits (79), Expect = 0.005
 Identities = 18/81 (22%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
 Frame = -3

Query: 341 LQEINRALQSNTYLTGQF-LTIADVALYYIVYPLLEHMSVAERDAFVHLCRWSKHIQAQP 165
           +++++  L+S+T++     +++AD+A+Y  ++  +  +S  E     ++CRW   IQ Q 
Sbjct: 125 VEQLDEFLKSSTFIAQDSGISVADLAVYARIHSYICGLSAKEGYKLNNVCRWFDFIQHQE 184

Query: 164 RVCHNRPPLPLNAVSLSVLAP 102
            V      + +   ++ + AP
Sbjct: 185 SVMEAANSMSMKLANIDLNAP 205


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
            Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 221  LLQTYAPVKDTLCNIMQHQQLLETGQSDMCYFVELCLFLAR 343
            LLQ Y  +K  + N+ + QQLL T  S++   V+    L++
Sbjct: 963  LLQRYWDLKREIINLQKRQQLLLTTNSNLMSSVDTLSILSK 1003


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -3

Query: 566 LDVSVGAVCYNTDKVPTAVLENKNVEGFVTIILSMASKCGTASSEEQ 426
           + V  G V   T K+P + L+NK VE ++  I ++AS      S+ +
Sbjct: 54  ISVQYGLVEELTLKIPWSSLKNKPVEIYIVGIRALASMEENVKSQSE 100


>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
 Frame = -3

Query: 386 FSNQAVANSTFAFKFL-QEINRALQSNTYLTGQFLTIADVAL-YYIVYPLLEHMSVAERD 213
           +  QA   +  A   +    +  L S TYL G  LT+AD+    ++ +     ++ +   
Sbjct: 121 YDEQAAKEAETAIALIFARFDEELASKTYLVGSRLTLADIFFTCFLKFGATYVLTKSYLA 180

Query: 212 AFVHLCRWSKHIQAQPRVCHNRPPL 138
            + H+ R+ + I  Q ++     PL
Sbjct: 181 KYTHIYRYYQTIYHQAKLDAITEPL 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,856,210
Number of Sequences: 5004
Number of extensions: 60447
Number of successful extensions: 152
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)