Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_K10
(685 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z72507-7|CAD56569.1| 373|Caenorhabditis elegans Hypothetical pr... 41 7e-04
Z72507-6|CAA96631.1| 398|Caenorhabditis elegans Hypothetical pr... 41 7e-04
Z81581-10|CAN86611.1| 309|Caenorhabditis elegans Hypothetical p... 32 0.44
Z81581-9|CAN86610.1| 307|Caenorhabditis elegans Hypothetical pr... 32 0.44
Z81581-11|CAN86612.1| 168|Caenorhabditis elegans Hypothetical p... 31 0.58
AC006804-5|AAF60754.1| 213|Caenorhabditis elegans Hypothetical ... 30 1.3
Z68014-4|CAA92026.2| 588|Caenorhabditis elegans Hypothetical pr... 30 1.8
U40409-3|ABO16455.1| 681|Caenorhabditis elegans Related to yeas... 28 7.1
U40409-2|AAA81388.3| 759|Caenorhabditis elegans Related to yeas... 28 7.1
U40409-1|ABO16456.1| 807|Caenorhabditis elegans Related to yeas... 28 7.1
AF039047-2|ABR92603.1| 403|Caenorhabditis elegans Serpentine re... 28 7.1
AF039047-1|AAB94224.2| 403|Caenorhabditis elegans Serpentine re... 28 7.1
AC087081-14|AAK66032.1| 250|Caenorhabditis elegans Hypothetical... 27 9.4
>Z72507-7|CAD56569.1| 373|Caenorhabditis elegans Hypothetical
protein F17C11.9b protein.
Length = 373
Score = 41.1 bits (92), Expect = 7e-04
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Frame = -3
Query: 341 LQEINRALQSNTYLTGQFLTIADVALYYIVYPLLEHMSVAE-RDAFVHLCRWSKHIQAQP 165
LQ ++R L TYL G+ L++ADV++ + P +++ A R + V++ RW + + QP
Sbjct: 92 LQVLDRVLVKKTYLVGERLSLADVSVALDLLPAFQYVLDANARKSIVNVTRWFRTVVNQP 151
Query: 164 RV 159
V
Sbjct: 152 AV 153
>Z72507-6|CAA96631.1| 398|Caenorhabditis elegans Hypothetical
protein F17C11.9a protein.
Length = 398
Score = 41.1 bits (92), Expect = 7e-04
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Frame = -3
Query: 341 LQEINRALQSNTYLTGQFLTIADVALYYIVYPLLEHMSVAE-RDAFVHLCRWSKHIQAQP 165
LQ ++R L TYL G+ L++ADV++ + P +++ A R + V++ RW + + QP
Sbjct: 117 LQVLDRVLVKKTYLVGERLSLADVSVALDLLPAFQYVLDANARKSIVNVTRWFRTVVNQP 176
Query: 164 RV 159
V
Sbjct: 177 AV 178
>Z81581-10|CAN86611.1| 309|Caenorhabditis elegans Hypothetical
protein T02E1.5b protein.
Length = 309
Score = 31.9 bits (69), Expect = 0.44
Identities = 27/104 (25%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Frame = -3
Query: 584 KMIGKYLDVSVGAVCYNTDKVPTAVLENKNVEGFVTIILSMASKCGTASSEEQRLLTYQW 405
+++ K + V+ A+ + T +LE+ +G + I SMA KCG A L+ Y
Sbjct: 140 ELMVKTVSVNTNALFFTTKNFLPGMLESN--KGHIVTIASMAGKCGVAG-----LVDYCA 192
Query: 404 LEYISMFSNQAVANSTFAFKFLQEINRALQSNTYL-TGQFLTIA 276
++ ++ N ++A+ +A K +++ + Y+ TG F IA
Sbjct: 193 SKHGAVGFNDSLASELYALK--KDVKTTVVCPIYINTGMFDGIA 234
>Z81581-9|CAN86610.1| 307|Caenorhabditis elegans Hypothetical
protein T02E1.5a protein.
Length = 307
Score = 31.9 bits (69), Expect = 0.44
Identities = 27/104 (25%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Frame = -3
Query: 584 KMIGKYLDVSVGAVCYNTDKVPTAVLENKNVEGFVTIILSMASKCGTASSEEQRLLTYQW 405
+++ K + V+ A+ + T +LE+ +G + I SMA KCG A L+ Y
Sbjct: 138 ELMVKTVSVNTNALFFTTKNFLPGMLESN--KGHIVTIASMAGKCGVAG-----LVDYCA 190
Query: 404 LEYISMFSNQAVANSTFAFKFLQEINRALQSNTYL-TGQFLTIA 276
++ ++ N ++A+ +A K +++ + Y+ TG F IA
Sbjct: 191 SKHGAVGFNDSLASELYALK--KDVKTTVVCPIYINTGMFDGIA 232
>Z81581-11|CAN86612.1| 168|Caenorhabditis elegans Hypothetical
protein T02E1.5c protein.
Length = 168
Score = 31.5 bits (68), Expect = 0.58
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Frame = -3
Query: 572 KYLDVSVGAVCYNTDKVPTAVLENKNVEGFVTIILSMASKCGTASSEEQRLLTYQWLEYI 393
K + V+ A+ + T +LE+ +G + I SMA KCG A L+ Y ++
Sbjct: 3 KTVSVNTNALFFTTKNFLPGMLESN--KGHIVTIASMAGKCGVAG-----LVDYCASKHG 55
Query: 392 SMFSNQAVANSTFAFKFLQEINRALQSNTYL-TGQFLTIA 276
++ N ++A+ +A K +++ + Y+ TG F IA
Sbjct: 56 AVGFNDSLASELYALK--KDVKTTVVCPIYINTGMFDGIA 93
>AC006804-5|AAF60754.1| 213|Caenorhabditis elegans Hypothetical
protein Y53G8B.1 protein.
Length = 213
Score = 30.3 bits (65), Expect = 1.3
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Frame = -3
Query: 350 FKFLQEINRALQSNTYLTGQFLTIADVALYYIVYPLLEHMSVAERDAFVHLCRWSKHIQA 171
FK L+E+ + + S + G ++IAD+ L IVY +E V + + + R S +
Sbjct: 138 FKALEELLQ-MHSGDFCVGNQISIADICLPSIVYNAIEKYHV-DMTPYPIITRISNKLAE 195
Query: 170 QP--RVCH--NRPPLPLN 129
P +V H N+P P N
Sbjct: 196 LPEFQVAHPNNQPDAPKN 213
>Z68014-4|CAA92026.2| 588|Caenorhabditis elegans Hypothetical
protein W04G3.4 protein.
Length = 588
Score = 29.9 bits (64), Expect = 1.8
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 2/105 (1%)
Frame = -3
Query: 446 TASSEEQRLLTYQWLEYISMFSNQAVANSTFAFKFLQEINR--ALQSNTYLTGQFLTIAD 273
++ S+E+ +LT + L+Y+ + V +KFL E+ R A + N LT L
Sbjct: 56 SSPSQEEAMLTIRALDYLVRNGGEKVHERCGRYKFLNELVRLIAPKYNGKLTSDALKTEI 115
Query: 272 VALYYIVYPLLEHMSVAERDAFVHLCRWSKHIQAQPRVCHNRPPL 138
+ L +I ++H + + + SK I P V P+
Sbjct: 116 IKLLFIWQLSIKH--IPKYKQVYESLKLSKIITDDPHVRETEVPV 158
>U40409-3|ABO16455.1| 681|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 41, isoform b
protein.
Length = 681
Score = 27.9 bits (59), Expect = 7.1
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -3
Query: 230 SVAERDAFVHLCRWSKHIQA 171
S +ERD F+H C W++++ A
Sbjct: 44 SGSERDGFIHCCSWNENLIA 63
>U40409-2|AAA81388.3| 759|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 41, isoform a
protein.
Length = 759
Score = 27.9 bits (59), Expect = 7.1
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -3
Query: 230 SVAERDAFVHLCRWSKHIQA 171
S +ERD F+H C W++++ A
Sbjct: 44 SGSERDGFIHCCSWNENLIA 63
>U40409-1|ABO16456.1| 807|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 41, isoform c
protein.
Length = 807
Score = 27.9 bits (59), Expect = 7.1
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -3
Query: 230 SVAERDAFVHLCRWSKHIQA 171
S +ERD F+H C W++++ A
Sbjct: 92 SGSERDGFIHCCSWNENLIA 111
>AF039047-2|ABR92603.1| 403|Caenorhabditis elegans Serpentine
receptor, class r protein4, isoform b protein.
Length = 403
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 482 VTIILSMASKCGTASSEEQRLLTYQWLE 399
+ +ILSM + T EE +LLT+ W E
Sbjct: 64 IVVILSMLYRAITFLGEEGKLLTFNWSE 91
>AF039047-1|AAB94224.2| 403|Caenorhabditis elegans Serpentine
receptor, class r protein4, isoform a protein.
Length = 403
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 482 VTIILSMASKCGTASSEEQRLLTYQWLE 399
+ +ILSM + T EE +LLT+ W E
Sbjct: 64 IVVILSMLYRAITFLGEEGKLLTFNWSE 91
>AC087081-14|AAK66032.1| 250|Caenorhabditis elegans Hypothetical
protein Y82E9BL.5 protein.
Length = 250
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 161 LAVVLVYVLTICISEQRHRVLLQTYAPVKDT 253
LA +L+Y+L +C VLL++ +P+K T
Sbjct: 103 LASILIYLLLLCPPISLANVLLESESPIKYT 133
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,076,383
Number of Sequences: 27780
Number of extensions: 352613
Number of successful extensions: 792
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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