Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_K08
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...   106   3e-24
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S...    28   1.2  
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch...    26   4.7  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    25   8.2  

>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score =  106 bits (255), Expect = 3e-24
 Identities = 67/191 (35%), Positives = 98/191 (51%), Gaps = 2/191 (1%)
 Frame = -1

Query: 714 LSXGFNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGIYGIPHCGALRHETCDD 535
           LS GF  +G SQG  F+RA+ Q C     +I+++++LG  H GI  IP C          
Sbjct: 96  LSNGFYALGLSQGGLFLRALAQTCD--AAKIRSLITLGSPHSGINTIPGCSPTNLICKAV 153

Query: 534 VRKLLNYAAYNSWVQNSLVQATYWHDPLDERTYEANSVFLADINN-VRTVNKT-YIQNLN 361
           V  +L    ++SW+QN +VQA Y+        Y  N+ FL  +NN V   N T  I+ L 
Sbjct: 154 VHSILGLGIWHSWIQNHVVQAQYYRTEKQYDKYLENNKFLTHLNNEVLHDNYTRNIEKLK 213

Query: 360 NLERFVLVMFDNDSIVQPKETEWFGFYAPGQAEKLVSLRESKIYLQDRLGLKKMDKAGKL 181
            L+  V V F+ D IV+P  +  FG+      E  + + +  +Y  + LGLK +   GKL
Sbjct: 214 ELDNLVAVSFERDDIVEPPYSTGFGWINETTGEN-IEMEDFVLY--ESLGLKDLVNQGKL 270

Query: 180 IFLSTPGDHLR 148
             +S PG HL+
Sbjct: 271 ETISFPGRHLQ 281


>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
           Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 543 CDDVRKLLNYAAYNSWVQNSLVQATYWHDPLDERTYEANSVF 418
           C   RK+++    N  + +S V A Y+ DP+DE   +  S F
Sbjct: 211 CTVPRKIVHVLQKNKNLISSAVNAFYYRDPIDENYCDRMSKF 252


>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
           Exg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/39 (28%), Positives = 16/39 (41%)
 Frame = -1

Query: 534 VRKLLNYAAYNSWVQNSLVQATYWHDPLDERTYEANSVF 418
           + ++ N      W +NSL+    W D  D  T   N  F
Sbjct: 86  IDEIFNSTQVPEWAKNSLLDTNTWLDTSDFNTSFTNETF 124


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
 Frame = -1

Query: 516 YAAYNSWVQNSLVQATYWHDPLDERTYEANSVFLADINNVRTVNKTYIQNLN--NLERFV 343
           +AA    + N L    Y  +PL + +    +V LAD   V+    T I N+N   +++ +
Sbjct: 412 FAAKREEIFNKLSMPVY--EPLKDLSECIGNV-LADGEPVQFSVGTNIHNMNFSAIDKQI 468

Query: 342 LVMFDNDSIVQPKETEWFGFYAPGQAEKLVSLRESKIYLQDRL 214
             +      V P       + APGQ   L  +R   IY+ +R+
Sbjct: 469 RSIIPQRVQVSPAVLAK-NYLAPGQTTALAQMRAVFIYISERI 510


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,786,777
Number of Sequences: 5004
Number of extensions: 56402
Number of successful extensions: 139
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)