Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_K08
         (717 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0008 + 84955-85048,85165-85225,85375-85426,85554-85661,856...   138   3e-33
10_08_0939 + 21696941-21697049,21697171-21697255,21698385-216984...    54   9e-08
03_04_0143 + 17670103-17670430,17670511-17670785,17670897-176713...    28   8.5  

>03_01_0008 +
           84955-85048,85165-85225,85375-85426,85554-85661,
           85662-85715,86140-86190,86348-86410,87048-87113,
           87190-87228,87493-87615,88251-88343,88437-88661
          Length = 342

 Score =  138 bits (335), Expect = 3e-33
 Identities = 73/200 (36%), Positives = 114/200 (57%), Gaps = 2/200 (1%)
 Frame = -1

Query: 717 KLSXGFNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGIYGIPHCGALRHETCD 538
           +LS G+N++G SQG    RAVV+ C    P +KN +SLGG H G   +P CG+     C 
Sbjct: 111 ELSNGYNIVGLSQGNLIGRAVVEFCDDG-PPVKNFISLGGPHAGTASVPLCGS--GIFCI 167

Query: 537 DVRKLLNYAAYNSWVQNSLVQATYWHDPLDERTYEANSVFLADINNVRTV--NKTYIQNL 364
               L+    Y+ +VQ  L  + Y   P D   Y     FL  +NN      N TY +  
Sbjct: 168 LADSLIKMEIYSDYVQAHLAPSGYMKIPTDISDYLKGCRFLPKLNNELPGERNATYKERF 227

Query: 363 NNLERFVLVMFDNDSIVQPKETEWFGFYAPGQAEKLVSLRESKIYLQDRLGLKKMDKAGK 184
           ++LE  VL+MF +D+++ P+ET WFG+Y  G  + ++  +++K+Y++D +GLK +D  G+
Sbjct: 228 SSLENLVLIMFQDDAVLIPRETAWFGYYPDGGFDPVLPPQKTKLYMEDWIGLKTLDDEGR 287

Query: 183 LIFLSTPGDHLRFTEEWMIK 124
           + F+S PG HL  ++  M+K
Sbjct: 288 VKFVSVPGGHLGISKTDMMK 307


>10_08_0939 +
           21696941-21697049,21697171-21697255,21698385-21698457,
           21698553-21698609,21698660-21698713,21699196-21699246,
           21699441-21699503,21700453-21700518,21700625-21700663,
           21702190-21702271,21703479-21703536,21703698-21703914,
           21704248-21704697
          Length = 467

 Score = 54.4 bits (125), Expect = 9e-08
 Identities = 29/88 (32%), Positives = 47/88 (53%)
 Frame = -1

Query: 717 KLSXGFNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGIYGIPHCGALRHETCD 538
           +L  G++++G SQG    RAV++ C    P +KN +S+GG H G   +P CG+     C 
Sbjct: 114 ELRKGYSIVGLSQGNLIGRAVIEYCDGG-PPVKNFISIGGPHAGTASVPLCGS--GIVCV 170

Query: 537 DVRKLLNYAAYNSWVQNSLVQATYWHDP 454
            +  L+    Y+++VQ  L  + Y   P
Sbjct: 171 LIDALIKLEIYSNYVQAHLAPSGYLKIP 198



 Score = 33.9 bits (74), Expect = 0.13
 Identities = 12/27 (44%), Positives = 22/27 (81%)
 Frame = -1

Query: 240 SKIYLQDRLGLKKMDKAGKLIFLSTPG 160
           +K+Y +D +GLK +++AG++ F+S PG
Sbjct: 200 TKLYTEDWIGLKALEEAGRVKFVSVPG 226


>03_04_0143 +
           17670103-17670430,17670511-17670785,17670897-17671376,
           17671454-17671849,17673215-17673289,17673939-17673960,
           17674041-17674129,17675204-17675495,17676019-17676087,
           17676394-17676572
          Length = 734

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 21/89 (23%), Positives = 36/89 (40%)
 Frame = -1

Query: 558 LRHETCDDVRKLLNYAAYNSWVQNSLVQATYWHDPLDERTYEANSVFLADINNVRTVNKT 379
           L+H   D++       AY S+   S+ +A   HD LD+R   A     + + +  T    
Sbjct: 469 LKHNRGDELGVFTPSHAYKSYQDISISRAPEQHDELDKRLLWAELSKTSRLLDDNTTGTN 528

Query: 378 YIQNLNNLERFVLVMFDNDSIVQPKETEW 292
            +  +++     L   D D +   KE  W
Sbjct: 529 ELNVVSSQHGEQLNAKDQDELQNIKEKVW 557


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,716,974
Number of Sequences: 37544
Number of extensions: 360170
Number of successful extensions: 797
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)