BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_K08
(717 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY135184-1|AAN17505.1| 1009|Anopheles gambiae laccase 1 protein. 27 0.58
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra... 23 7.2
>AY135184-1|AAN17505.1| 1009|Anopheles gambiae laccase 1 protein.
Length = 1009
Score = 27.1 bits (57), Expect = 0.58
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 526 LPHIITCFVSQGTTMRYAIDA 588
+PH+ C +S GTT RY A
Sbjct: 394 VPHVSQCPISPGTTFRYTFRA 414
>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
transcriptase protein.
Length = 1049
Score = 23.4 bits (48), Expect = 7.2
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Frame = -1
Query: 231 YLQDRLGLKKMDKAGKLIFLSTPGDHLRFTEEWMIKNNN*TLSF*LIF--YLCSKS 70
Y Q+ GL+ K L D + TE W++ N L F F Y C +S
Sbjct: 83 YYQNVRGLRTKTKEFHLAVSEADFDLIALTETWLVDNIPSALLFNNNFSVYRCDRS 138
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 700,648
Number of Sequences: 2352
Number of extensions: 13206
Number of successful extensions: 19
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 72765525
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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