Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_K06
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta su...   153   2e-38
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy...    29   0.60 
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    27   1.8  
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos...    27   2.4  
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    27   3.2  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    26   4.2  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    25   9.7  

>SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta
           subunit Pdb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 366

 Score =  153 bits (371), Expect = 2e-38
 Identities = 75/137 (54%), Positives = 99/137 (72%)
 Frame = -1

Query: 664 IMYGIPFPMSDEAQSKDFVLPIGKXKVEREGRHITXVCAGRGTDTALKAAEQLAGSKGIE 485
           I+YG  FP+S EA S+DFVLP G  KVER G+ IT V       TAL+AA++L    G+E
Sbjct: 209 ILYGKTFPISKEALSEDFVLPFGLAKVERPGKDITIVGESISVVTALEAADKLKADYGVE 268

Query: 484 CEVVNLRTIRPMDFDTIARSIAKTHHLITVEQGWPQSGIGAEICARVMESPSFFELDAPV 305
            EV+NLR+IRP+D +TIA S+ KT+ ++TV+Q + Q GIG+EI A++MES +F  LDAPV
Sbjct: 269 AEVINLRSIRPLDINTIAASVKKTNRIVTVDQAYSQHGIGSEIAAQIMESDAFDYLDAPV 328

Query: 304 WRVCGADVPMPYARTLE 254
            RV  ADVPMPY+  +E
Sbjct: 329 ERVSMADVPMPYSHPVE 345


>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 667

 Score = 29.1 bits (62), Expect = 0.60
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = -1

Query: 418 KTHHLITVEQGWP---QSGIGAEICARVMESPSFFEL 317
           K H L+  ++GWP   +SG+G ++  +  +   FFE+
Sbjct: 222 KRHVLVQPQEGWPPLVRSGLGMKLTGQSQDLECFFEI 258


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 416 FGNGPSDRVEIHWPYCS*IYYFTFYTL 496
           +G G S  +E ++ YCS I+Y+   TL
Sbjct: 759 YGWGASSEMECYFSYCSLIFYYQATTL 785


>SPBC18H10.03 |tif35||translation initiation factor
           eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 282

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +3

Query: 600 IGSTKSLDWA-SSDXGNGIPYI 662
           + S+KSLDWA   D G G+P I
Sbjct: 1   MSSSKSLDWADDEDYGTGLPSI 22


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 578 GGSAYHXSVRWTRHRHRAQGR*TTGWKQGYRM 483
           G +A+  S+RW    HRA  R T   K  Y +
Sbjct: 132 GAAAFEGSIRWWSRDHRAHHRYTDTDKDPYNV 163


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 291 PHTRHTGASSSKNDGDSMTRAQISA 365
           PH+RHT   +    G S++R   SA
Sbjct: 45  PHSRHTSTVAGTEGGSSLSRRHTSA 69


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 452  WPYCS*IYYFTFYTLASSQLFSGLER 529
            W Y S  +Y TF+ L+   +F  LER
Sbjct: 969  WDYFSPNFYLTFWKLSLYDVFVPLER 994


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,135,128
Number of Sequences: 5004
Number of extensions: 34475
Number of successful extensions: 93
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)