Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_K02
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    28   1.5  
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar...    27   2.0  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    27   2.6  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    26   4.6  
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc...    26   6.1  
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb...    25   8.1  

>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 164 FWINLNSFFLNTICLAFTAFINL 96
           FWIN+NS    T+ +A   F+N+
Sbjct: 189 FWININSGIWITVFIALLCFVNM 211


>SPAC9G1.05 |||actin cortical patch component Aip1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 595

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 560 QFCFSFD-VYPVGRIPLFVXSLFXTKV*VFYLSIEALRSLPG 682
           Q CF+ D V+P G  P+ V S+    + V    I+ LRSL G
Sbjct: 387 QGCFAKDNVFPTGYQPIGVCSVEDCLILVTVSDIQVLRSLTG 428


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -3

Query: 481 PKLAKSVQPYSSFSETNEQQFIF 413
           P+L +S++PY S  + + Q+FIF
Sbjct: 920 PQLVRSLKPYISVLKQDHQEFIF 942


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = +2

Query: 563 FCFSFDVYPVGRIPLFVXSLFXTKV*VFYLSIEALRSLPGQLVXHNNIA 709
           + F  D  P+  IPL V  L    V  F   +   RSL  +L  H  +A
Sbjct: 540 YFFHMDDVPLDNIPLVVCDLDKNSVSTFGKIVRLSRSLRSKLQAHLKLA 588


>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 585

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 164 FWINLNSFFLNTICLAFTAFINL 96
           +W NLNS    T+ + F  FIN+
Sbjct: 189 YWTNLNSGIWVTVFIVFLFFINI 211


>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 517 FKPSLDFTNHSRPKLAKSVQPYSSFSETNE 428
           F PS +++++   +L  S  PY+  S  NE
Sbjct: 205 FHPSTEYSDYETAELLDSSLPYAIISSVNE 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,570,726
Number of Sequences: 5004
Number of extensions: 49538
Number of successful extensions: 110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)