Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_K01
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc...    26   3.7  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    22   5.9  
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    25   6.4  

>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 555

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 363 SVPVLNHIEPHRRCSFNQQFV 301
           S  +L+ I PH+RCSF  Q +
Sbjct: 200 SFSLLSQITPHQRCSFYAQVI 220


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 22.2 bits (45), Expect(2) = 5.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 106 E*LLFQRIILENFTLRFFLAFKNSLLFNI 20
           E LL   + L+NFTL   +A+  SL+ N+
Sbjct: 92  ETLLHLLVSLDNFTLIKAVAYAVSLIANV 120



 Score = 21.4 bits (43), Expect(2) = 5.9
 Identities = 6/17 (35%), Positives = 14/17 (82%)
 Frame = -3

Query: 262 TLSYLYKHILHNYLPMY 212
           +L YL ++I+H++ P++
Sbjct: 57  SLIYLQRYIVHHWSPLF 73


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 429 SIVSIVGGLRSLALAPTWSKRQLSFA-DQQGSGQNQHKYQS 548
           +I + +  ++ L L P WSKR++ +  D+   G  Q  Y S
Sbjct: 250 NIAAAIKAVQELPLNPKWSKRRIYYGRDRCAVGLKQPAYFS 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,236,317
Number of Sequences: 5004
Number of extensions: 42464
Number of successful extensions: 95
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)