Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_J22
(578 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 29 0.49
SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces p... 28 1.1
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 1.5
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 1.5
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 27 2.0
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc... 26 3.5
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 26 4.6
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 25 6.1
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 25 6.1
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 25 8.0
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 29.1 bits (62), Expect = 0.49
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +1
Query: 427 SPFLSASVSKFPNLNFEYSSFAASSKSWAVTLLTASISTSWDSALKSSA 573
SP S S SKF + +F S+ ASS S + A +++ DS+ SSA
Sbjct: 211 SPSSSKSSSKFSSSSFITSTTPASSSSSGAIVSNAKTASTDDSSSASSA 259
Score = 25.0 bits (52), Expect = 8.0
Identities = 17/45 (37%), Positives = 28/45 (62%)
Frame = +1
Query: 439 SASVSKFPNLNFEYSSFAASSKSWAVTLLTASISTSWDSALKSSA 573
S+S SK + + SS ++SSKS + + ++ S+S S+ KSSA
Sbjct: 166 SSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSSSSSSSSSKSSA 210
>SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 402
Score = 27.9 bits (59), Expect = 1.1
Identities = 11/48 (22%), Positives = 28/48 (58%)
Frame = +1
Query: 412 SVDVLSPFLSASVSKFPNLNFEYSSFAASSKSWAVTLLTASISTSWDS 555
S V + F + S ++PN + Y + ++++++ ++L S+ +WD+
Sbjct: 256 SPPVHTNFTNGSFPQYPNGTYMYPAAVSTNRTFPLSLPGQSVELAWDA 303
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.5 bits (58), Expect = 1.5
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = -1
Query: 500 EDAANEEYSKFKFGNLETDADKKGDKTSTERCLQRHLVLVTQRKLGNDSKTLLPQ 336
E+A NE+ ++ G + DK+ DKT+ E+ +TQ + DS L Q
Sbjct: 1095 EEALNEKLARL-VGEQMVEGDKEKDKTNEEKNKDEVKAEMTQPVVNQDSHDLQDQ 1148
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.5 bits (58), Expect = 1.5
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = -1
Query: 500 EDAANEEYSKFKFGNLETDADKKGDKTSTERCLQRHLVLVTQRKLGNDSKTLLPQ 336
E+A NE+ ++ G + DK+ DKT+ E+ +TQ + DS L Q
Sbjct: 1095 EEALNEKLARL-VGEQMVEGDKEKDKTNEEKNKDEVKAEMTQPVVNQDSHDLQDQ 1148
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 27.1 bits (57), Expect = 2.0
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = -2
Query: 316 RHYVRLLKE*LRSKSDLNFR*NLFQMLHVDSTNINIPVK*MEKLAPKFFSTMQT-TKVAI 140
+ Y+ LL L + D+ NL L+VDS+ + +P+ ++A FS + + + +I
Sbjct: 400 KRYIMLLPGGLFTHKDIL---NLLVPLYVDSSRVKVPIDIRNEMAALCFSQIDSYVRFSI 456
Query: 139 LQSL 128
L SL
Sbjct: 457 LCSL 460
>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 372
Score = 26.2 bits (55), Expect = 3.5
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 364 PNFRCVTRTRCRCKHRSVDVLSPFLSASVSKFPNLNFE 477
P C + RC CK +D+ S S+ +++F NL E
Sbjct: 332 PLLHCPRKGRCFCKPEEIDLSSN--SSCIARFINLTNE 367
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.8 bits (54), Expect = 4.6
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +1
Query: 427 SPFLSASVSKFPNLNFEYSSFAASSKSWAVTLLTASISTSWDSALKSSA 573
SPF S S ++ SSF +SS S+ TL ++ S ++ SA
Sbjct: 292 SPFYSNSSVIPTSVPSSVSSFTSSSSSYTTTLTASNTSVTYTGTGTGSA 340
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 25.4 bits (53), Expect = 6.1
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -1
Query: 434 KGDKTSTERCLQRHLVLVTQRKLGNDSKTL 345
KGDK S E C HL K+G + + L
Sbjct: 820 KGDKRSVEYCHYLHLAAEEALKIGANQEAL 849
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 25.4 bits (53), Expect = 6.1
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = -1
Query: 548 QDVDIDAVNKVTAQDFEDAANEEYSKFKFGNLETDADKKGDKTSTERCLQRHLVLVTQ 375
Q ++ + +NK + +DA +EY+KFK E DK D T++ L+ + + Q
Sbjct: 191 QKLETEDMNKSNRKLLQDAT-DEYAKFKDKFPEAPLDK--DNLQTQKELEARIECLKQ 245
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.0 bits (52), Expect = 8.0
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = +1
Query: 436 LSASVSKFPNLNFEYSSFAASSKSWAVTLLTASISTSWDSALKS 567
+S SVS ++N YSS +S+ + T + +SI++S +++ S
Sbjct: 795 ISTSVSSQSSMNSSYSSPISSNSVTSSTSIISSIASSSYTSIPS 838
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,989,087
Number of Sequences: 5004
Number of extensions: 40209
Number of successful extensions: 139
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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