Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_J22
(578 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0062 - 11047883-11048032,11048337-11048459,11048625-110487... 41 6e-04
11_02_0120 + 8506444-8506489,8507760-8507821,8508548-8509095,850... 32 0.38
05_05_0005 + 21442819-21442916,21443053-21443119,21443226-214432... 30 1.2
01_06_1378 + 36788283-36789734 30 1.2
07_01_0793 - 6169661-6169936,6170942-6171025,6171473-6171590,617... 29 3.5
06_03_1336 - 29424470-29424897,29425243-29429653 29 3.5
05_07_0326 + 29274287-29274428,29274577-29275379 29 3.5
11_05_0053 + 18687430-18687524,18687804-18687936,18688153-186882... 28 4.7
05_05_0049 - 21895172-21895181,21895297-21896717 28 4.7
03_06_0406 - 33703767-33704045,33705167-33705226,33705295-337053... 28 6.2
>06_02_0062 -
11047883-11048032,11048337-11048459,11048625-11048754,
11049232-11049306,11050402-11050467,11050516-11050772
Length = 266
Score = 41.1 bits (92), Expect = 6e-04
Identities = 38/133 (28%), Positives = 56/133 (42%), Gaps = 10/133 (7%)
Frame = -1
Query: 449 TDADKKGDKTSTERCLQRHLVLVTQRKL--GNDSKTL--LPQGHWQEGETLRQTAERIVK 282
TDADK D+ S +R L L L+ K D K + P+ + +TLR AE +K
Sbjct: 124 TDADKTNDRKSLQRALDNRLYLLLYGKAYGAPDDKPVWHFPEKVYDNEDTLRLCAESALK 183
Query: 281 EQIGSELQIKFISNAPCGFYKYKYPSEMNGKVGAKIFFYYANYKSGNPTKSKVN------ 120
+G F+ NAP + E + K FF+ + TK +
Sbjct: 184 SVLGGLNNTYFVGNAPMA-HMVVDQKEDSSISSFKRFFFKSQVVGA--TKYDIGKCQDHV 240
Query: 119 WLTRKELDEMXPQ 81
W+T+ EL E P+
Sbjct: 241 WVTKDELLEYFPE 253
>11_02_0120 +
8506444-8506489,8507760-8507821,8508548-8509095,
8509381-8509537
Length = 270
Score = 31.9 bits (69), Expect = 0.38
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -1
Query: 380 TQRKLGNDSKTLLPQGHWQEGETLRQTAERIVK 282
T+ K+GN SK HW EG++L++ A I K
Sbjct: 111 TEIKVGNGSKVCFWTDHWLEGKSLQEIAPSIFK 143
>05_05_0005 +
21442819-21442916,21443053-21443119,21443226-21443291,
21443368-21443414,21443480-21443543,21443627-21443707,
21443781-21443823,21443912-21443961,21444262-21444343,
21445045-21445120,21445451-21445558,21445782-21445833,
21445911-21446570,21446652-21448067
Length = 969
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 290 FFQQSDVVSRPPANAPEEVMSLNHFLIS 373
F +QSD S PP + P + + LN FL+S
Sbjct: 771 FKKQSDSHSGPPVDVPAQTIRLNSFLVS 798
>01_06_1378 + 36788283-36789734
Length = 483
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/70 (22%), Positives = 29/70 (41%)
Frame = +1
Query: 364 PNFRCVTRTRCRCKHRSVDVLSPFLSASVSKFPNLNFEYSSFAASSKSWAVTLLTASIST 543
P+ R C+HR +SP + + + A++ WA L AS++
Sbjct: 321 PDATSTFRMAVNCRHRLRPAISPVYFGNAIQSAATTATVAELASNDLRWAAAKLNASLAA 380
Query: 544 SWDSALKSSA 573
D A++ +A
Sbjct: 381 YDDGAIRRAA 390
>07_01_0793 -
6169661-6169936,6170942-6171025,6171473-6171590,
6172917-6172987
Length = 182
Score = 28.7 bits (61), Expect = 3.5
Identities = 21/72 (29%), Positives = 33/72 (45%)
Frame = -1
Query: 428 DKTSTERCLQRHLVLVTQRKLGNDSKTLLPQGHWQEGETLRQTAERIVKEQIGSELQIKF 249
D+TS + + LV V + S L P+G W+ ET+ + A R E+ G +
Sbjct: 35 DETSDDG--HKKLVEVLMINSQSGSGLLFPKGGWENDETVEEAAAREAIEEAGVRGDLVQ 92
Query: 248 ISNAPCGFYKYK 213
+ GFY +K
Sbjct: 93 L----LGFYDFK 100
>06_03_1336 - 29424470-29424897,29425243-29429653
Length = 1612
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = -1
Query: 407 CLQRHLVLV---TQRKLGNDSKTLLPQGHWQEGETLRQTAERI 288
C Q+ L LV T +LGN+ L + +W +G T+R A I
Sbjct: 1480 CTQKELHLVAASTVCQLGNEQTILFREDNWLQGGTIRAIAPSI 1522
>05_07_0326 + 29274287-29274428,29274577-29275379
Length = 314
Score = 28.7 bits (61), Expect = 3.5
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
Frame = -1
Query: 560 KAESQDVDIDAVNKVTAQDFEDAANEEYSKFKFGNLETDAD-KKGDKTSTERCLQRHLVL 384
K + Q+ + +A K Q E+ EE +K K E +A KK K E + +H
Sbjct: 150 KKQQQEEEEEAAKKKQQQLQEE---EEATKKKQQEEEEEAAAKKTKKLQEEEAIAKHKPA 206
Query: 383 VTQRKLGNDSKTLLP-QGHWQEGETLRQTAERIVKEQ 276
T + + T P GH + E+L + +R +E+
Sbjct: 207 TTTERKQAEPTTAAPLPGHVVDRESLAEKVKRRAEEE 243
>11_05_0053 +
18687430-18687524,18687804-18687936,18688153-18688236,
18689045-18689194,18689319-18689510
Length = 217
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = -1
Query: 356 SKTLLPQGHWQEGETLRQTAERIVKEQIGSELQIKFISNAPCGFYKYKYPSEMN 195
S + P+G W++ E++ + A R E+ G + +S P G + +K S+ N
Sbjct: 70 SDLIFPKGGWEDDESIGEAACREAFEEAGVK---GVLSGTPLGEWIFKSKSKQN 120
>05_05_0049 - 21895172-21895181,21895297-21896717
Length = 476
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/63 (22%), Positives = 26/63 (41%)
Frame = +1
Query: 385 RTRCRCKHRSVDVLSPFLSASVSKFPNLNFEYSSFAASSKSWAVTLLTASISTSWDSALK 564
R C+HR +SP + + + A++ WA L A++ D A++
Sbjct: 322 RMAVNCRHRLRPAISPLYFGNAIQSVATTATVAELASNDLRWAAARLNATVVAHEDGAIR 381
Query: 565 SSA 573
+A
Sbjct: 382 RAA 384
>03_06_0406 -
33703767-33704045,33705167-33705226,33705295-33705378,
33705991-33706093,33706427-33706487,33706993-33707026
Length = 206
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 347 LLPQGHWQEGETLRQTAERIVKEQIG 270
L P+G W+ ET+ Q A R E+ G
Sbjct: 63 LFPKGGWENDETVEQAAAREAVEEAG 88
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,921,540
Number of Sequences: 37544
Number of extensions: 225229
Number of successful extensions: 585
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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