Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_J22
         (578 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024828-1|AAF60808.2|  419|Caenorhabditis elegans Hypothetical ...    39   0.002
Z82053-2|CAB04835.1|  365|Caenorhabditis elegans Hypothetical pr...    32   0.34 
Z71265-4|CAA95833.1|  417|Caenorhabditis elegans Hypothetical pr...    31   0.78 
Z74045-1|CAA98552.1|  535|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AY741200-1|AAU89102.1|  596|Caenorhabditis elegans STE20-like se...    28   4.2  
AL132898-15|CAC14417.2|  596|Caenorhabditis elegans Hypothetical...    28   4.2  
Z78019-7|CAB01454.2|  547|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z81146-3|CAB03524.1|  496|Caenorhabditis elegans Hypothetical pr...    27   7.3  
AF067946-2|AAC17685.1|  223|Caenorhabditis elegans Nudix family ...    27   9.6  
AF022982-5|AAB69936.2|  799|Caenorhabditis elegans Hypothetical ...    27   9.6  

>AC024828-1|AAF60808.2|  419|Caenorhabditis elegans Hypothetical
           protein Y55F3BL.1 protein.
          Length = 419

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = -1

Query: 545 DVDIDAVNKVTAQDFEDAANEEYSKFKFGNLETDADKKGDKTSTERCLQRHLVLVT-QRK 369
           D +I   N V   D++ AA +   KFKFG    +   K +  S ER LQR LVL+T +R 
Sbjct: 19  DEEIGVTNAVREDDWKKAAEDLDKKFKFG----EFPPKNELKSVERELQRKLVLITAERC 74

Query: 368 LGNDSKT 348
           +G  S T
Sbjct: 75  IGELSGT 81


>Z82053-2|CAB04835.1|  365|Caenorhabditis elegans Hypothetical
           protein T26E3.2 protein.
          Length = 365

 Score = 31.9 bits (69), Expect = 0.34
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
 Frame = -1

Query: 392 LVLVTQRKLGNDSKTLLPQGHWQEGETLRQTAERIVKEQIG---SELQIKFISNAPCGFY 222
           ++L+ + K     K  +P G  + GET+ +   R VKE+ G     +++  +     G+Y
Sbjct: 90  VLLIQEAKKSCRGKWYMPAGRVEAGETIEEAVVREVKEETGYSCDVVELLSLQVQGSGWY 149

Query: 221 KYKYPSEMNG 192
           +Y +   + G
Sbjct: 150 RYAFYCNITG 159


>Z71265-4|CAA95833.1|  417|Caenorhabditis elegans Hypothetical
           protein M05B5.4 protein.
          Length = 417

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 18/71 (25%), Positives = 33/71 (46%)
 Frame = -1

Query: 329 WQEGETLRQTAERIVKEQIGSELQIKFISNAPCGFYKYKYPSEMNGKVGAKIFFYYANYK 150
           W+  E L  TA++     +G+  +     N   G+ +YK  + +NG + +     +  Y 
Sbjct: 277 WKPHEILATTADK--NYTVGNIKEFFQDINYMVGWEQYKQAARLNGNLSSPGVPVHCIYG 334

Query: 149 SGNPTKSKVNW 117
           +G PT  K +W
Sbjct: 335 TGVPTPEKFSW 345


>Z74045-1|CAA98552.1|  535|Caenorhabditis elegans Hypothetical
           protein T27F2.1 protein.
          Length = 535

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -1

Query: 317 ETLRQTAERIVKEQIGSELQIKFISN-APCGFYKYKYPSEMNGKVGAK 177
           E  R   E+IV  ++ S L ++     AP  + +Y  PS+ NG  G++
Sbjct: 150 EKTRMALEKIVNSKVASALPVRHADKLAPAQYIRYT-PSQQNGAAGSQ 196


>AY741200-1|AAU89102.1|  596|Caenorhabditis elegans STE20-like
           serine/threonine kinase protein.
          Length = 596

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +1

Query: 373 RCVTRTRCRCKHRSVDVLSPFLSA-SVSKFPNLNFEYSSFAASSKSWAVTLL 525
           +C+   +C+    SVD LS  + A S    PN+   Y+SF A  + W V  L
Sbjct: 137 KCINLEKCQT---SVDELSHEIQAMSQCNHPNVVSYYTSFIAQEELWVVMRL 185


>AL132898-15|CAC14417.2|  596|Caenorhabditis elegans Hypothetical
           protein Y59A8B.23 protein.
          Length = 596

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +1

Query: 373 RCVTRTRCRCKHRSVDVLSPFLSA-SVSKFPNLNFEYSSFAASSKSWAVTLL 525
           +C+   +C+    SVD LS  + A S    PN+   Y+SF A  + W V  L
Sbjct: 137 KCINLEKCQT---SVDELSHEIQAMSQCNHPNVVSYYTSFIAQEELWVVMRL 185


>Z78019-7|CAB01454.2|  547|Caenorhabditis elegans Hypothetical
           protein ZK863.3 protein.
          Length = 547

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 21/62 (33%), Positives = 31/62 (50%)
 Frame = -1

Query: 359 DSKTLLPQGHWQEGETLRQTAERIVKEQIGSELQIKFISNAPCGFYKYKYPSEMNGKVGA 180
           D K    QG+   G  L + AERI +E+ GS+ +I  IS      Y  K   E++G   +
Sbjct: 484 DPKKFQHQGY---GSLLMEEAERIAREEHGSD-KIAVISGVGTREYYRKLGYELDGPYMS 539

Query: 179 KI 174
           K+
Sbjct: 540 KM 541


>Z81146-3|CAB03524.1|  496|Caenorhabditis elegans Hypothetical
           protein K10D11.5 protein.
          Length = 496

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 245 SNAPCGFYKYKYPSEMNGKVGAKIFFYYANYKSGNPTK 132
           +NA   F +       N ++G K FF    +KSG+P+K
Sbjct: 347 TNAFLNFTRSSSQFSSNARIGRKGFFASRYFKSGSPSK 384


>AF067946-2|AAC17685.1|  223|Caenorhabditis elegans Nudix family
           protein 2 protein.
          Length = 223

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 395 HLVLVTQRKLGNDSKTL-LPQGHWQEGETLRQTAERIVKEQIG 270
           ++VLV Q ++      L LP G    GET +Q A R +KE+ G
Sbjct: 90  YIVLVKQYRIPCGKLCLELPAGLIDAGETAQQAAIRELKEETG 132


>AF022982-5|AAB69936.2|  799|Caenorhabditis elegans Hypothetical
           protein T23B12.4 protein.
          Length = 799

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 186 NFSIHFTGIFIFVESTWSI*NKFYLKFRSDLLLNYSF 296
           N+S H    F+F      I + F L FR DL + Y F
Sbjct: 547 NYSYHSVATFVFHNLLAIINHYFELGFRMDLYVPYEF 583


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,906,327
Number of Sequences: 27780
Number of extensions: 224965
Number of successful extensions: 670
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)