Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_J21
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    27   0.21 
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    27   0.21 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    25   0.84 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    25   0.84 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   1.1  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   3.4  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    22   4.5  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +3

Query: 537 LQVRMKPGCILTKFECQIDRKK 602
           L V M+P C++ +++C + RK+
Sbjct: 248 LTVGMRPECVVPEYQCAVKRKE 269


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +3

Query: 537 LQVRMKPGCILTKFECQIDRKKR 605
           L V M+P C++ +++C + RK++
Sbjct: 45  LTVGMRPECMVPEYQCAVKRKEK 67


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 479 YSSYHNMIIWSIIMDNGFGVAGSHETRL 562
           ++ Y   IIW   +   FG   +HET++
Sbjct: 710 FTMYTTCIIWLAFVPIYFGTGNAHETQI 737


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 479 YSSYHNMIIWSIIMDNGFGVAGSHETRL 562
           ++ Y   IIW   +   FG   +HET++
Sbjct: 800 FTMYTTCIIWLAFVPIYFGTGNAHETQI 827


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 454 FISMSALFIFQLPQYDNMVNYYGQW 528
           ++ + AL++   P YD + N+Y  W
Sbjct: 654 WLQVLALWLNHSPNYDQVTNWYMGW 678


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 608 CSFFSIYLAFKFCENTAWFHANLQ 537
           C   SI  A +FC N    HA+++
Sbjct: 159 CILKSITCALQFCHNAGIVHADVK 182


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/18 (55%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
 Frame = -2

Query: 491 GNWNMNKALIEIN-ITGY 441
           GNW MN    EIN I G+
Sbjct: 9   GNWKMNGTKSEINDIVGF 26


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,366
Number of Sequences: 438
Number of extensions: 3972
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)