Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_J19
         (381 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po...    26   1.7  
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom...    25   4.0  
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    25   4.0  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    24   7.0  
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch...    24   9.3  
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    24   9.3  

>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 481

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 60  QYLHIVNRYRYXRISSQYKNTSVCXLRFPLAAL 158
           QY + V R  +  ++++Y   SVC    P A L
Sbjct: 356 QYSYTVRRNAFLNVANKYLPNSVCIYHVPRAGL 388


>SPAC1486.09 |||ribosome biogenesis protein Nob1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 16/59 (27%), Positives = 22/59 (37%)
 Frame = -1

Query: 381 YYPIRKXCLNDRSETSDDNERLTSDVKTXSIFDPELYSCQNEVLNLTGSDDEIDVVNCQ 205
           +Y I +     R ETS  N  L  D     +  PE     +E    TG    + V + Q
Sbjct: 29  FYTIPRVIAEIRDETSRKNFELWGDQVIQRVPKPEFIKKVSEFAKQTGDYSSLSVTDIQ 87


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 196 DRRLTVDNVDFVIRSRQIEDFVL 264
           D + T+DNVDF  RS+ ++D  L
Sbjct: 134 DLKETLDNVDFDARSKILQDLRL 156



 Score = 23.8 bits (49), Expect = 9.3
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -1

Query: 354 NDRSETSDDNERLTSDVKTXSIFDPELYSCQNEVLNLTGSDDEIDVVNCQ 205
           ND ++  +D  +L SDV T +    +  S    VLN+      ++ V+ Q
Sbjct: 51  NDNNKNKEDLSKLYSDVTTSNTSHEKDGSEDISVLNVNSKGASLNQVSTQ 100


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -1

Query: 120 YFYIEKKCXDIGIDLRCEDIGNGYSYSAVHAVLXSAV 10
           + + +K+C +    L   D+ N    S VH V+  AV
Sbjct: 556 FVFSKKRCEEYVDTLTNRDLNNHQEKSEVHVVIEKAV 592


>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = -1

Query: 378 YPIRKXCLNDRSETSDDNERLTSDVKTXSIFDPELYSCQNEVLNLTGSDDEIDV 217
           +P+ +   +  S T+ +NE L  +    S+ +      Q E L +  SD  IDV
Sbjct: 50  FPVSEDATDYPSGTTSENESLPLNRAPRSLREVASELAQEETLPVETSDLNIDV 103


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -3

Query: 301 NXVNLRPGVIQLSERSPQSD 242
           N V++ PG +++ +RSP +D
Sbjct: 688 NHVDMSPGFVKILKRSPLAD 707


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,119,591
Number of Sequences: 5004
Number of extensions: 15653
Number of successful extensions: 39
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)