Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_J18
         (540 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0260 + 23660883-23662070                                         28   4.1  
02_05_0356 + 28252154-28252897,28253171-28253377,28253473-282537...    28   4.1  
10_08_0314 + 16683473-16683564,16683945-16683945,16684057-166842...    27   7.2  
06_03_1024 - 26958473-26958661,26958750-26958815,26959234-269593...    27   9.6  
01_06_1540 - 38111557-38111985,38112087-38112311,38112494-381128...    27   9.6  
01_06_0196 - 27410837-27413296                                         27   9.6  
01_01_0875 + 6856440-6857195,6858670-6858918,6859025-6859147,685...    27   9.6  

>05_05_0260 + 23660883-23662070
          Length = 395

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +2

Query: 272 ALNGRRLC---GLSRAFSFNGNRIGVPLNFPDFQFSGALYGLSAGFYVRDGLDF 424
           +L GR L    G SR++S N        N+PD +F+  +Y L  G   R+GL F
Sbjct: 305 SLGGRMLFVARGCSRSYSKN--------NYPDAEFNEGVYFLDDGRLYREGLSF 350


>02_05_0356 +
           28252154-28252897,28253171-28253377,28253473-28253710,
           28254853-28255220
          Length = 518

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 299 LSRAFSFNGNRIGVPLNFPDFQFSGALYGLSAGFYV 406
           L + F+F   R+G  +  P+  F+G L G S+ F V
Sbjct: 279 LDKIFAFLLRRLGFNIQIPEASFTGGLVGNSSPFAV 314


>10_08_0314 +
           16683473-16683564,16683945-16683945,16684057-16684268,
           16684655-16684747,16685106-16685160,16685480-16685566
          Length = 179

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 174 LVIPPYLWSDLRS*LILKCLWCLLSHHRLG 85
           LV  P  W  + S ++LKCL+ LL   ++G
Sbjct: 24  LVSGPSCWLSIWSVIVLKCLFVLLHDKKMG 53


>06_03_1024 -
           26958473-26958661,26958750-26958815,26959234-26959303,
           26959526-26959773,26959938-26960029,26960726-26960871,
           26961001-26961185,26961721-26961838,26961948-26962087
          Length = 417

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 6/37 (16%)
 Frame = -3

Query: 436 PPVEEVKTVADVEASAKAVEG------PAELEVGKVE 344
           P  E+VK ++  E SAK VEG      P   +VGKV+
Sbjct: 248 PLDEDVKLISGEEQSAKTVEGPECNIKPQSFDVGKVD 284


>01_06_1540 -
           38111557-38111985,38112087-38112311,38112494-38112854,
           38112965-38113058,38113136-38113369,38113891-38113945
          Length = 465

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 220 LIHLKSAHH-FQQPMFWQRFEWPKTLWPQSRF 312
           ++HL  A+  + QP+F     W  + WP+++F
Sbjct: 315 ILHLIGAYQVYAQPIFATMERWISSRWPEAKF 346


>01_06_0196 - 27410837-27413296
          Length = 819

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/17 (64%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
 Frame = +1

Query: 265 WQRFEWP-KTLWPQSRF 312
           WQ FEWP  TL P  RF
Sbjct: 151 WQSFEWPTDTLLPSQRF 167


>01_01_0875 +
           6856440-6857195,6858670-6858918,6859025-6859147,
           6859288-6859479
          Length = 439

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 445 ATQPPVEEVKTVADVEASAKAVEGPAELEVGKVEG 341
           AT  PV++V  V DV  +     GPA + VG + G
Sbjct: 28  ATGVPVDDVDKVVDVPGAVIVGAGPAGVAVGALLG 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,698,103
Number of Sequences: 37544
Number of extensions: 230966
Number of successful extensions: 607
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)