Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_J18
         (540 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.1  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   3.5  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   4.6  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   4.6  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   8.1  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   8.1  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   8.1  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    21   8.1  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    21   8.1  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    21   8.1  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    21   8.1  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    21   8.1  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   8.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.1  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -3

Query: 472  IASPAIKSIATQPPVEEVKTVADVEASAKAVEGPAELEVGK 350
            ++SP    I+  PP+E    +       + V+G  EL  GK
Sbjct: 1224 VSSPQALFISWLPPLEPNGIITKYNLYTRVVDGREELNHGK 1264


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -3

Query: 472  IASPAIKSIATQPPVEEVKTVADVEASAKAVEGPAELEVGK 350
            ++SP    I+  PP+E    +       + V+G  EL  GK
Sbjct: 1220 VSSPQALFISWLPPLEPNGIITKYNLYTRVVDGREELNHGK 1260


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -1

Query: 123 KCLWCLLSHHRL 88
           KC W + S+HR+
Sbjct: 69  KCTWTITSYHRI 80


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 211 VQHLIHLKSAHHFQQPMFWQRFEW 282
           V  L+ L     F+  +FWQ++ W
Sbjct: 77  VSDLLFLILGLPFELSVFWQQYPW 100


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 344 LNFPDFQFSGALYGLSAGFYVRDGLDFFY 430
           +N  +FQ+   L+GLS      DG    Y
Sbjct: 228 INGFNFQWKDGLFGLSLSALQTDGYKILY 256


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 7   FSGHNFLITRSDPITVLPLNLHRS 78
           F G N++  +SD I V  ++++ S
Sbjct: 111 FDGINYIYVKSDDIWVPDISVYNS 134


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 22  FLITRSDPITVLPLNLHRSIFTKTVM 99
           F++  S  +TVL LN H     + VM
Sbjct: 334 FMVASSVVLTVLVLNFHHRTPDRYVM 359


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 22  FLITRSDPITVLPLNLHRSIFTKTVM 99
           F++  S  +TVL LN H     + VM
Sbjct: 334 FMVASSVVLTVLVLNFHHRTPDRYVM 359


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 197 SRSHSHQD*LSHHTSGRTC 141
           SR+H  Q   SH++  R+C
Sbjct: 219 SRTHGFQHTSSHYSRERSC 237


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 197 SRSHSHQD*LSHHTSGRTC 141
           SR+H  Q   SH++  R+C
Sbjct: 219 SRTHGFQHTSSHYSRERSC 237


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 197 SRSHSHQD*LSHHTSGRTC 141
           SR+H  Q   SH++  R+C
Sbjct: 219 SRTHGFQHTSSHYSRERSC 237


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 197 SRSHSHQD*LSHHTSGRTC 141
           SR+H  Q   SH++  R+C
Sbjct: 219 SRTHGFQHTSSHYSRERSC 237


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 197 SRSHSHQD*LSHHTSGRTC 141
           SR+H  Q   SH++  R+C
Sbjct: 208 SRTHGFQHTSSHYSRERSC 226


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 197 SRSHSHQD*LSHHTSGRTC 141
           SR+H  Q   SH++  R+C
Sbjct: 219 SRTHGFQHTSSHYSRERSC 237


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 203 NHSRSHSHQD*LSHHTS 153
           N+SR HS Q    HH S
Sbjct: 392 NNSRGHSGQSSSHHHGS 408


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,417
Number of Sequences: 438
Number of extensions: 2314
Number of successful extensions: 16
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)