Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_J17
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch...    42   6e-05
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    28   1.1  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    27   3.4  
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    25   7.8  
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    25   7.8  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   7.8  
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb...    25   7.8  

>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 42.3 bits (95), Expect = 6e-05
 Identities = 19/33 (57%), Positives = 22/33 (66%)
 Frame = -2

Query: 682 YLTHDSXSVRKTHCTGRKHKDNVKFYYQKWMEE 584
           +LTHDS SVRK H  GR H  NV+ YY K  +E
Sbjct: 12  WLTHDSQSVRKAHNAGRAHIQNVQDYYTKVAQE 44


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +2

Query: 467 HYRRIPRWWYCSAFVAKWILSXF 535
           +Y+  P+WWY + F+  + L+ F
Sbjct: 527 NYKEAPQWWYATLFIVVFGLTIF 549


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/42 (23%), Positives = 24/42 (57%)
 Frame = +3

Query: 30  CWLINKLSS*ICNSQWKNFSVFILPMLLKHNTLITKLTHIYE 155
           C+++++L+S  CN+Q+ N     +P+ ++    + K   + E
Sbjct: 348 CFMLDRLNSLYCNTQFLNLEDIHVPLPMRETLFMYKAHAVTE 389


>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -1

Query: 398 SWRSYGTTNDDGSTWANAANDGNETAYDGPH 306
           S+  +   NDD   WA AA D  E  +  P+
Sbjct: 101 SFEYFNLGNDDQGMWAAAAMDAAEANFSPPN 131


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
           Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -1

Query: 455 TPTSCTRWSSRYDTSSIYGSWR-SYGTTN 372
           T ++C +WSS+   S I   WR SY   N
Sbjct: 121 TTSTCMKWSSKTTKSEIEVEWRDSYLDAN 149


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = -1

Query: 602 SEMDGGTSTTXHXCNNSGIQSRQNXSKSIWQQRHCNTTTLGSFGNGTRRTPTSCT 438
           ++ +  TS T      S   +  N   S++ +   +TTT G FGN T + P++ T
Sbjct: 544 TQTNNATSNTGTGLFGSNNANTTNTGGSLFNKP--STTTGGLFGNTTAQQPSTTT 596


>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/63 (22%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = -1

Query: 548 IQSRQNXSKSIWQQRHCNTTTLGSFGNGTRRTPTSCTRWSSRY--DTSSIYGSWRSYGTT 375
           ++ R+N +  +  Q+H + + L  +G+GT +      + + +   D + +  S +S G +
Sbjct: 304 LEFRKNKASRMTTQKHIDQSILDRYGDGTSKVKDKKAKNNEKEVPDLAILDKSEKSKGES 363

Query: 374 NDD 366
           N D
Sbjct: 364 NTD 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,271,334
Number of Sequences: 5004
Number of extensions: 37504
Number of successful extensions: 98
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)