Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_J17
         (689 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0369 - 9505330-9505652,9507262-9507532,9507649-9507690,950...    53   2e-07
09_02_0448 - 9458463-9459752                                           29   3.5  
07_03_1605 - 28093235-28094031,28094887-28094974                       29   3.5  
09_06_0194 - 21469815-21470117,21470226-21470376,21470463-214707...    28   6.1  
03_05_0361 - 23448459-23448910,23448990-23449406,23449542-234497...    28   6.1  

>02_02_0369 -
           9505330-9505652,9507262-9507532,9507649-9507690,
           9508416-9508458,9508853-9508860
          Length = 228

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 23/35 (65%), Positives = 27/35 (77%)
 Frame = -2

Query: 688 DTYLTHDSXSVRKTHCTGRKHKDNVKFYYQKWMEE 584
           DTYLTHDS SVRK H  G KHK NV+ YYQ++ E+
Sbjct: 10  DTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQ 44


>09_02_0448 - 9458463-9459752
          Length = 429

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = +1

Query: 577 VLVPPSISDNKTSHCLYVFF 636
           V++PP I D K SHCL VFF
Sbjct: 146 VVIPP-IPDKKYSHCLAVFF 164


>07_03_1605 - 28093235-28094031,28094887-28094974
          Length = 294

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
 Frame = -1

Query: 473 GNGTRRT---PTSCTR-WSSRYDTSSIYGSWRSYGTTNDDGSTWANAANDGNETAYDGP 309
           GNGTR T   P+SCT+ WS +   +++ G     GTT    S    + N  +E+  D P
Sbjct: 87  GNGTRHTVFGPSSCTQSWSHQAAAAAMGGK----GTTGSRSSISLCSDNYDSESEVDDP 141


>09_06_0194 -
           21469815-21470117,21470226-21470376,21470463-21470700,
           21470784-21470991,21471107-21471309,21471407-21471508,
           21471622-21472945
          Length = 842

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/43 (30%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
 Frame = -1

Query: 500 CNTTTLGSFGNGTRRTPTSCTRWSSR-YDTSSIYGSWRSYGTT 375
           C           TRR PT C  W     D   +  SW   G T
Sbjct: 391 CVAYAYADLSRSTRRDPTRCLMWGGELLDMEKVNESWGDLGET 433


>03_05_0361 -
           23448459-23448910,23448990-23449406,23449542-23449735,
           23449854-23449902,23450155-23450539,23450578-23450874,
           23451650-23451961
          Length = 701

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
 Frame = -1

Query: 482 GSFGNGTRRTPTSCTRWSSRYDTSSIYGS------WRSYGTTNDDGSTWANAANDGNETA 321
           G  G G    P +C+   +R+  S++  S      W  +  T  DGS+W++   +G  T+
Sbjct: 310 GQQGYGGGVPPPTCSGGHTRFGASALLISNACSLNWYLWNHTMSDGSSWSSDGTEGQYTS 369


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,393,813
Number of Sequences: 37544
Number of extensions: 233268
Number of successful extensions: 693
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)