Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_J17
         (689 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X12517-1|CAA31037.1|  159|Homo sapiens protein ( Human mRNA for ...    79   1e-14
BC121083-1|AAI21084.1|  159|Homo sapiens small nuclear ribonucle...    79   1e-14
BC121082-1|AAI21083.1|  159|Homo sapiens small nuclear ribonucle...    79   1e-14
AL139100-3|CAI20351.1|  180|Homo sapiens small nuclear ribonucle...    79   1e-14
AL139100-2|CAI20350.1|  159|Homo sapiens small nuclear ribonucle...    79   1e-14
AK223098-1|BAD96818.1|  159|Homo sapiens small nuclear ribonucle...    76   1e-13
M18465-1|AAA36618.1|  106|Homo sapiens protein ( Human U1 small ...    43   9e-04

>X12517-1|CAA31037.1|  159|Homo sapiens protein ( Human mRNA for U1
           small nuclear RNP-specific C protein. ).
          Length = 159

 Score = 79.4 bits (187), Expect = 1e-14
 Identities = 38/71 (53%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
 Frame = -2

Query: 688 DTYLTHDSXSVRKTHCTGRKHKDNVKFYYQKWMEEXXXXXXXXXXXXXXXXXXAQNPFG- 512
           DTYLTHDS SVRKTHC+GRKHK+NVK YYQKWMEE                     PF  
Sbjct: 10  DTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPTPFSA 69

Query: 511 --NKGTAIPPP 485
               G  IPPP
Sbjct: 70  PPPAGAMIPPP 80


>BC121083-1|AAI21084.1|  159|Homo sapiens small nuclear
           ribonucleoprotein polypeptide C protein.
          Length = 159

 Score = 79.4 bits (187), Expect = 1e-14
 Identities = 38/71 (53%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
 Frame = -2

Query: 688 DTYLTHDSXSVRKTHCTGRKHKDNVKFYYQKWMEEXXXXXXXXXXXXXXXXXXAQNPFG- 512
           DTYLTHDS SVRKTHC+GRKHK+NVK YYQKWMEE                     PF  
Sbjct: 10  DTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPTPFSA 69

Query: 511 --NKGTAIPPP 485
               G  IPPP
Sbjct: 70  PPPAGAMIPPP 80


>BC121082-1|AAI21083.1|  159|Homo sapiens small nuclear
           ribonucleoprotein polypeptide C protein.
          Length = 159

 Score = 79.4 bits (187), Expect = 1e-14
 Identities = 38/71 (53%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
 Frame = -2

Query: 688 DTYLTHDSXSVRKTHCTGRKHKDNVKFYYQKWMEEXXXXXXXXXXXXXXXXXXAQNPFG- 512
           DTYLTHDS SVRKTHC+GRKHK+NVK YYQKWMEE                     PF  
Sbjct: 10  DTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPTPFSA 69

Query: 511 --NKGTAIPPP 485
               G  IPPP
Sbjct: 70  PPPAGAMIPPP 80


>AL139100-3|CAI20351.1|  180|Homo sapiens small nuclear
           ribonucleoprotein polypeptide C protein.
          Length = 180

 Score = 79.4 bits (187), Expect = 1e-14
 Identities = 38/71 (53%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
 Frame = -2

Query: 688 DTYLTHDSXSVRKTHCTGRKHKDNVKFYYQKWMEEXXXXXXXXXXXXXXXXXXAQNPFG- 512
           DTYLTHDS SVRKTHC+GRKHK+NVK YYQKWMEE                     PF  
Sbjct: 31  DTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPTPFSA 90

Query: 511 --NKGTAIPPP 485
               G  IPPP
Sbjct: 91  PPPAGAMIPPP 101


>AL139100-2|CAI20350.1|  159|Homo sapiens small nuclear
           ribonucleoprotein polypeptide C protein.
          Length = 159

 Score = 79.4 bits (187), Expect = 1e-14
 Identities = 38/71 (53%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
 Frame = -2

Query: 688 DTYLTHDSXSVRKTHCTGRKHKDNVKFYYQKWMEEXXXXXXXXXXXXXXXXXXAQNPFG- 512
           DTYLTHDS SVRKTHC+GRKHK+NVK YYQKWMEE                     PF  
Sbjct: 10  DTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPTPFSA 69

Query: 511 --NKGTAIPPP 485
               G  IPPP
Sbjct: 70  PPPAGAMIPPP 80


>AK223098-1|BAD96818.1|  159|Homo sapiens small nuclear
           ribonucleoprotein polypeptide C variant protein.
          Length = 159

 Score = 75.8 bits (178), Expect = 1e-13
 Identities = 36/71 (50%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
 Frame = -2

Query: 688 DTYLTHDSXSVRKTHCTGRKHKDNVKFYYQKWMEEXXXXXXXXXXXXXXXXXXAQNPFG- 512
           DTYLTHDS SVRKTHC+GRKH++N K YYQKWMEE                     PF  
Sbjct: 10  DTYLTHDSPSVRKTHCSGRKHRENEKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPTPFSA 69

Query: 511 --NKGTAIPPP 485
               G  IPPP
Sbjct: 70  PPPAGAMIPPP 80


>M18465-1|AAA36618.1|  106|Homo sapiens protein ( Human U1 small
           nuclear ribonucleoprotein mRNA, 3' end. ).
          Length = 106

 Score = 43.2 bits (97), Expect = 9e-04
 Identities = 22/53 (41%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
 Frame = -2

Query: 634 RKHKDNVKFYYQKWMEEXXXXXXXXXXXXXXXXXXAQNPFG---NKGTAIPPP 485
           RKHK+NVK YYQKWMEE                     PF      G  IPPP
Sbjct: 4   RKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPTPFSAPPPAGAMIPPP 56


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,175,657
Number of Sequences: 237096
Number of extensions: 1349976
Number of successful extensions: 2690
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2688
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7895240574
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)