Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_J13
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   4.1  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    26   5.4  
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    26   7.2  
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom...    25   9.5  

>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 525 QYYYFYVYLASSQKLIGNGLPVRG-VSVLCGFRFPDLSEQFPSIR 656
           +Y+ F+V L S +K+  NGLP    V  + G    D S +    R
Sbjct: 62  EYFAFWVELISRKKVTNNGLPFSSFVKSIVGILEVDASNEILCFR 106


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 7/32 (21%), Positives = 18/32 (56%)
 Frame = +3

Query: 459 IFCYNTFYWWLHVKRSQCSTCYQYYYFYVYLA 554
           +F ++ FYW+  +  S  +T   Y+ + + ++
Sbjct: 569 VFIFSVFYWFFKISSSSLATAVLYFGYSLLIS 600


>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 31  SRIQINYYLTSYVTTLRNNMD 93
           SRIQ   +L SY  +LRN++D
Sbjct: 532 SRIQAKNHLESYAYSLRNSLD 552


>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -1

Query: 281 AS*SLKNNIYWRNKKNQLHF*HSHKNSLIVTFEL 180
           AS   K N +W  K  Q    HS  NSL+   E+
Sbjct: 172 ASLQAKENEFWLKKLIQTSLHHSSDNSLVFYLEM 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,140,465
Number of Sequences: 5004
Number of extensions: 65365
Number of successful extensions: 166
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)