Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_J12
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    27   3.4  
SPBC16E9.03c |||DUF1783 family protein|Schizosaccharomyces pombe...    27   3.4  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    27   3.4  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    26   4.5  

>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = -2

Query: 589  DTEGKSMSGAVSDSDAKVRDNFVDLISKFAHSLNGEENNTKTNLMGLQPYSEENDQFL 416
            D  G+S  G V+ + ++V  +F D   +F     G++ N    L+ +  Y+ EN Q++
Sbjct: 1865 DELGRSDYGMVAANPSRVSASFTDAALRFIVDHIGQQTNL---LLEIVNYNVENQQYV 1919


>SPBC16E9.03c |||DUF1783 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +3

Query: 9   YQAHNFHHIVHSLQRSCT*KSXGSPKREPRVVLLVTCWT 125
           YQ+  F  I H ++  CT  S G   + P  V   T WT
Sbjct: 211 YQSQRFGPIAHWVELDCTLTSNGKTIKIPTGVSKDTQWT 249


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 285 GNLDNKSPIKFLQRAPVSLSAIPPHKPI*QNLNPLS 392
           GNL ++ P KF   + V  +AI P KP  +  N LS
Sbjct: 222 GNLHSQQPPKFSVDSSVDDNAITPRKPFSKIPNRLS 257


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 23/92 (25%), Positives = 39/92 (42%)
 Frame = -2

Query: 664 DMKVYENKMKGPAHGDELAYIFEPLDTEGKSMSGAVSDSDAKVRDNFVDLISKFAHSLNG 485
           D+  + N +KGPAH       FE  D   K +S +  D      DNF+ L  +  + +  
Sbjct: 420 DLHEFYNSVKGPAHS------FETEDPVLKFVSQSYDDL-FPYMDNFIQLAVQLFYHI-- 470

Query: 484 EENNTKTNLMGLQPYSEENDQFLKINDGIKTD 389
              + K N + ++ +S  +    +I D    D
Sbjct: 471 ---SKKVNCLYVEAFSSSDAVLQRIQDNAVVD 499


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,904,178
Number of Sequences: 5004
Number of extensions: 61845
Number of successful extensions: 157
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)