Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_J12
         (692 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC065530-1|AAH65530.1| 1003|Homo sapiens methyl-CpG binding doma...    33   0.73 
AK056399-1|BAB71176.1| 1003|Homo sapiens protein ( Homo sapiens ...    33   0.73 
AB067474-1|BAB67780.1|  967|Homo sapiens KIAA1887 protein protein.     33   0.73 
AK125809-1|BAC86302.1|  147|Homo sapiens protein ( Homo sapiens ...    33   0.97 
BC146789-1|AAI46790.1| 1583|Homo sapiens GRIP and coiled-coil do...    32   2.2  
AC012487-1|AAX88838.1| 1583|Homo sapiens unknown protein.              32   2.2  
AB002334-1|BAA20794.2| 1635|Homo sapiens KIAA0336 protein.             32   2.2  

>BC065530-1|AAH65530.1| 1003|Homo sapiens methyl-CpG binding domain
           protein 6 protein.
          Length = 1003

 Score = 33.5 bits (73), Expect = 0.73
 Identities = 21/55 (38%), Positives = 24/55 (43%)
 Frame = +3

Query: 69  SXGSPKREPRVVLLVTCWTLGGSVGFLPSRPGTSMFLFPPRLFNGSLFPPRLPNP 233
           S G P   P   +  T   L G  G LP  P +    FP     G LFPPRL +P
Sbjct: 139 SPGPPSARPPCRVPPTT-PLNGGPGSLPPEPPSVSQAFPTLAGPGGLFPPRLADP 192


>AK056399-1|BAB71176.1| 1003|Homo sapiens protein ( Homo sapiens
           cDNA FLJ31837 fis, clone NT2RP7000069, weakly similar to
           MUCIN 1 PRECURSOR. ).
          Length = 1003

 Score = 33.5 bits (73), Expect = 0.73
 Identities = 21/55 (38%), Positives = 24/55 (43%)
 Frame = +3

Query: 69  SXGSPKREPRVVLLVTCWTLGGSVGFLPSRPGTSMFLFPPRLFNGSLFPPRLPNP 233
           S G P   P   +  T   L G  G LP  P +    FP     G LFPPRL +P
Sbjct: 139 SPGPPSARPPCRVPPTT-PLNGGPGSLPPEPPSVSQAFPTLAGPGGLFPPRLADP 192


>AB067474-1|BAB67780.1|  967|Homo sapiens KIAA1887 protein protein.
          Length = 967

 Score = 33.5 bits (73), Expect = 0.73
 Identities = 21/55 (38%), Positives = 24/55 (43%)
 Frame = +3

Query: 69  SXGSPKREPRVVLLVTCWTLGGSVGFLPSRPGTSMFLFPPRLFNGSLFPPRLPNP 233
           S G P   P   +  T   L G  G LP  P +    FP     G LFPPRL +P
Sbjct: 103 SPGPPSARPPCRVPPTT-PLNGGPGSLPPEPPSVSQAFPTLAGPGGLFPPRLADP 156


>AK125809-1|BAC86302.1|  147|Homo sapiens protein ( Homo sapiens
           cDNA FLJ43821 fis, clone TESTI4002290. ).
          Length = 147

 Score = 33.1 bits (72), Expect = 0.97
 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
 Frame = +3

Query: 18  HNFHHIVHSLQRSCT*KSXGSPKREPRVVLLVTCWTLGGSVGFLPSRPGTSMFLFPPRLF 197
           H  HH+V + QR    +  G P  +  +  L +CWTLG S     S  G   +++     
Sbjct: 62  HGKHHVVDAEQRDKQERGLGQPPAQKEMSQL-SCWTLGPSASLAGSFSGGGSWVWEGLHT 120

Query: 198 NGSLF--PPRLPNPKLFKGLS 254
           +  L   PP   N   F  +S
Sbjct: 121 SSPLLESPPNKKNHCFFTFMS 141


>BC146789-1|AAI46790.1| 1583|Homo sapiens GRIP and coiled-coil domain
            containing 2 protein.
          Length = 1583

 Score = 31.9 bits (69), Expect = 2.2
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = -2

Query: 583  EGKSMSGAVSDSDAKVRDNFVDLISKFAHSLNGEENNTKTNLMGLQPYSEENDQFLK 413
            + KSMS A ++   + R++   LI +    L   +NN + N+  LQ    E+D  L+
Sbjct: 1234 KNKSMSQAETEGAKQEREHLEMLIDQLKIKLQDSQNNLQINVSELQTLQSEHDTLLE 1290


>AC012487-1|AAX88838.1| 1583|Homo sapiens unknown protein.
          Length = 1583

 Score = 31.9 bits (69), Expect = 2.2
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = -2

Query: 583  EGKSMSGAVSDSDAKVRDNFVDLISKFAHSLNGEENNTKTNLMGLQPYSEENDQFLK 413
            + KSMS A ++   + R++   LI +    L   +NN + N+  LQ    E+D  L+
Sbjct: 1234 KNKSMSQAETEGAKQEREHLEMLIDQLKIKLQDSQNNLQINVSELQTLQSEHDTLLE 1290


>AB002334-1|BAA20794.2| 1635|Homo sapiens KIAA0336 protein.
          Length = 1635

 Score = 31.9 bits (69), Expect = 2.2
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = -2

Query: 583  EGKSMSGAVSDSDAKVRDNFVDLISKFAHSLNGEENNTKTNLMGLQPYSEENDQFLK 413
            + KSMS A ++   + R++   LI +    L   +NN + N+  LQ    E+D  L+
Sbjct: 1286 KNKSMSQAETEGAKQEREHLEMLIDQLKIKLQDSQNNLQINVSELQTLQSEHDTLLE 1342


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,147,594
Number of Sequences: 237096
Number of extensions: 2384431
Number of successful extensions: 4878
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4877
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7951235188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)