Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_J12
         (692 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    25   0.68 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   1.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.8  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   4.8  

>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 3/105 (2%)
 Frame = -2

Query: 634 GPAHGDELAYIF-EPLDTEGKSMSGAVSDSDAKVRDNFVDLISKFAHSLNGEENNTKTNL 458
           G  HGDE+ Y+F  PL+   KS+  +  + D  +R   +   S+FA+     + +++   
Sbjct: 493 GVLHGDEVEYVFGHPLN---KSLKYSDKERDLSLR--MILYFSEFAYLGKPTKEDSE--- 544

Query: 457 MGLQPYSEENDQFLKINDGIKT--DKGFRFCQMGLWGGMADRLTG 329
                YS +  ++  I D  KT   KG R      W     +L G
Sbjct: 545 --WPSYSRDEPKYF-IFDAEKTGLGKGPRTTYCAFWNEFLPKLKG 586


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 470 CIVLFSIKAVREFGNEIYKVVPNFSITVGYCTTH*F 577
           CIV  S   VR  GN +  ++P+    VG   TH F
Sbjct: 215 CIVFGSDMIVRSIGNSLMVILPDL---VGKKITHFF 247


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 490  NGEENNTKTNLMGLQPYSE 434
            +GEE   +  L GL+PY++
Sbjct: 1064 DGEEGGAELRLTGLRPYTK 1082


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 490  NGEENNTKTNLMGLQPYSE 434
            +GEE   +  L GL+PY++
Sbjct: 1060 DGEEGGAELRLTGLRPYTK 1078


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 9   YQAHNFHHIVHSLQRSC 59
           Y A++ HH+  S + SC
Sbjct: 435 YSAYSLHHVRSSRESSC 451


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,536
Number of Sequences: 438
Number of extensions: 4627
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)