Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_J09
         (439 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    29   0.41 
SPAC23D3.11 |ayr1||1-acyldihydroxyacetone phosphate reductase |S...    28   0.55 
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    26   2.2  
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr...    26   2.2  
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    25   3.9  
SPAC22F3.07c |atp20||F0-ATPase subunit G|Schizosaccharomyces pom...    25   5.1  

>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 28.7 bits (61), Expect = 0.41
 Identities = 16/62 (25%), Positives = 31/62 (50%)
 Frame = +1

Query: 34  NLNIVSNKVPFANAFTNVEPEDDFSSNQNI*CGLFDCLPFPCSCLSTCDQITDALSNLRQ 213
           NL+ + +     +  +N+  ++   S+ +   G+F  +P P   L T    TD+ SN+R+
Sbjct: 291 NLSTLQDNASLTSQGSNLSSQNSGLSSSS--SGIFGRMPIPAQSLDTTMLRTDSNSNIRR 348

Query: 214 LT 219
            T
Sbjct: 349 AT 350


>SPAC23D3.11 |ayr1||1-acyldihydroxyacetone phosphate reductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 296

 Score = 28.3 bits (60), Expect = 0.55
 Identities = 17/74 (22%), Positives = 31/74 (41%)
 Frame = -2

Query: 345 LIKMASAVAKVPTLINTAITQARPKLNIFMKYARVELAPPKLSELPQIRQGIGNLITSAK 166
           ++ + S V+ VP   N A   ++  L  +    R+ELAP  +     +  G+   I S  
Sbjct: 130 IVNVNSLVSYVPFAFNAAYNASKAALLAYSNTLRIELAPFGVQVTSIMTGGVQTKIQSKP 189

Query: 165 TGAWKRQTVKEATL 124
            G      + E ++
Sbjct: 190 LGTMTEAAIPENSI 203


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 37  LNIVSNKVPFANAFTNVEPEDDFSSNQNI 123
           LN+ SN VP  N    +E EDD  SN+++
Sbjct: 154 LNLSSNIVPSINESKILEQEDDDVSNKSL 182


>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 508

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +1

Query: 139 DCLPFPCSCLSTCDQITDALSN 204
           DC  FP  CL  C Q  D  SN
Sbjct: 62  DCTIFPVMCLVYCIQFLDKTSN 83


>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -3

Query: 167 RQEHGKGKQSKRP 129
           ++ HGKGK SKRP
Sbjct: 87  KKAHGKGKSSKRP 99


>SPAC22F3.07c |atp20||F0-ATPase subunit G|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 118

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -2

Query: 156 WKRQTVKEATLNVLVGAEVIFWFYIGECIGKRHL 55
           WK Q+ +    N  +  E++  F  G+ +G+R +
Sbjct: 81  WKSQSSEAWGRNFFIAVEIVGIFCAGQMVGRRKI 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,538,914
Number of Sequences: 5004
Number of extensions: 25288
Number of successful extensions: 60
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)