Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_J09
(439 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_06_0087 - 10520708-10520823,10521041-10521130,10521571-105219... 37 0.006
05_07_0294 - 29038259-29038420,29038526-29038632,29038889-290390... 28 3.8
12_01_0684 + 5828947-5829012,5831123-5832103,5832200-5832326,583... 27 5.0
03_01_0490 + 3711009-3711383,3712104-3712202,3713209-3713461,371... 27 5.0
05_06_0195 + 26291126-26291316,26292432-26292618 27 6.6
01_05_0599 - 23550663-23550849,23553236-23553417 27 6.6
12_01_0222 - 1675077-1675289,1675476-1675553,1675943-1676002,167... 27 8.7
11_06_0125 - 20356683-20357071,20359531-20362285 27 8.7
11_01_0221 - 1720952-1721164,1721351-1721428,1721836-1721895,172... 27 8.7
08_02_0246 + 14745367-14745372,14745452-14746106,14746299-147472... 27 8.7
08_01_0525 + 4564885-4565221,4565337-4565476,4565582-4565677,456... 27 8.7
03_02_0663 + 10256898-10258915,10259162-10259248,10259463-102597... 27 8.7
>10_06_0087 -
10520708-10520823,10521041-10521130,10521571-10521901,
10522248-10522409,10522506-10522726,10523852-10524056
Length = 374
Score = 37.1 bits (82), Expect = 0.006
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = -2
Query: 267 NIFMKYARVELAPPKLSELPQIRQGIGNLITSAKTGAWK-RQTVKEATLNVLVGAEVIFW 91
N+F+ + L P+ S+ PQ + N I +KTG WK TV+ T V+VG +V
Sbjct: 53 NVFVGM-NISLIDPRNSDDPQSPKNGENAIIKSKTGYWKVVGTVRIPTSTVIVGMKVSLD 111
Query: 90 FYIGEC-IGKR 61
Y GE GKR
Sbjct: 112 HYEGEAPSGKR 122
>05_07_0294 -
29038259-29038420,29038526-29038632,29038889-29039093,
29039173-29039536,29039588-29039772,29039879-29040080,
29040697-29041589
Length = 705
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -2
Query: 231 PPKLSELPQIRQGIGNLITSAKTGAWKRQTVKEATLNVLVGAE 103
P + L ++ + +G + + KTG WK ++EA + GA+
Sbjct: 320 PAEFQRLQEVERHLGRCMDARKTGDWK-SALREADAAIANGAD 361
>12_01_0684 +
5828947-5829012,5831123-5832103,5832200-5832326,
5832623-5832705,5832752-5832917,5833337-5833399,
5833624-5833733,5834227-5834276,5834528-5834664,
5835180-5835281,5835871-5835988,5836575-5836627,
5836710-5836813,5836910-5836972,5837375-5837503,
5837508-5837605,5838446-5838500,5839260-5839311,
5839996-5840113,5841906-5842035,5842156-5842437
Length = 1028
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +1
Query: 142 CLPFPCSCLSTCDQITDAL-SNLRQLT*L-GWS 234
C P CS L T +Q+T AL ++L L L GWS
Sbjct: 687 CFPLNCSHLETINQLTGALPTSLGDLPYLEGWS 719
>03_01_0490 +
3711009-3711383,3712104-3712202,3713209-3713461,
3713908-3714090,3714091-3714227,3714511-3714710,
3714797-3714994,3715109-3715271
Length = 535
Score = 27.5 bits (58), Expect = 5.0
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -2
Query: 228 PKLSELPQIRQGIGNLITSAKTGAWKRQTVKEATLNVLVGAEVIFW--FYIGECIG 67
P +++LP G+ + + G WK +T E +++ V A + W Y+G+ G
Sbjct: 296 PNIADLPTGTAGVWRVSAINEAGGWKDRTTVE-DMDLAVRASLKGWQFLYVGDIRG 350
>05_06_0195 + 26291126-26291316,26292432-26292618
Length = 125
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 153 KRQTVKEATLNVLVGAEVIFWFYIGECIGK 64
K V+ A + L G E+ WF +GE +G+
Sbjct: 87 KDLNVEHAGVAALFGIELYAWFCVGEIVGR 116
>01_05_0599 - 23550663-23550849,23553236-23553417
Length = 122
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = -2
Query: 156 WK-RQTVKEATLNV--LVGAEVIFWFYIGECIGK 64
WK R+ +K L + L G E+ WF +GE +G+
Sbjct: 80 WKNRKELKVEDLGIVTLFGVELYAWFCVGEIVGR 113
>12_01_0222 -
1675077-1675289,1675476-1675553,1675943-1676002,
1676103-1676206,1676321-1676479,1676768-1676894,
1677569-1677736,1677890-1678000,1678090-1678243,
1678409-1678744,1678854-1679038,1679141-1679239,
1679376-1679639,1679776-1679952,1680351-1680644,
1680753-1680920,1681574-1681918,1682002-1682171,
1682272-1682422,1683296-1683365,1683456-1683640,
1683999-1684092,1684195-1684313,1684658-1684717,
1684844-1684930,1685631-1685717,1685905-1686013,
1686105-1686183,1686350-1686437,1686611-1686675,
1687570-1687722,1688514-1688620,1688702-1688784,
1688926-1689016,1689095-1689231,1689612-1689701,
1689795-1689962,1690366-1690560
Length = 1809
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = -3
Query: 437 NELTCSFDRHRNSKIENY 384
+ELT +FD++R S+ ENY
Sbjct: 653 SELTSTFDQNRPSRFENY 670
>11_06_0125 - 20356683-20357071,20359531-20362285
Length = 1047
Score = 26.6 bits (56), Expect = 8.7
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +1
Query: 37 LNIVSNKVPFANAFTNVEPEDDFSSNQNI*CGLFDCLPFPCSC 165
++IV NK+ + E DDFSS Q I C L L SC
Sbjct: 972 MDIVDNKLCLGIDQHDPETTDDFSSKQKIDC-LISLLRLGLSC 1013
>11_01_0221 -
1720952-1721164,1721351-1721428,1721836-1721895,
1721996-1722099,1722214-1722372,1722668-1722794,
1723469-1723636,1723789-1723899,1723989-1724142,
1724308-1724643,1724753-1724937,1725040-1725138,
1725275-1725538,1725674-1725850,1726249-1726542,
1726649-1726816,1727473-1727817,1727901-1728070,
1728171-1728321,1729193-1729262,1729353-1729537,
1729896-1729989,1730094-1730212,1730558-1730617,
1730744-1730830,1732348-1732434,1732622-1732730,
1732822-1732900,1733067-1733154,1733328-1733392,
1734287-1734439,1735231-1735337,1735419-1735501,
1735643-1735733,1735812-1735948,1736118-1736207,
1736301-1736468,1736875-1737057
Length = 1805
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = -3
Query: 437 NELTCSFDRHRNSKIENY 384
+ELT +FD++R S+ ENY
Sbjct: 649 SELTSTFDQNRPSRFENY 666
>08_02_0246 +
14745367-14745372,14745452-14746106,14746299-14747269,
14748123-14749168,14750669-14751473
Length = 1160
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -2
Query: 195 GIGNLITSAKTGAWKRQTVKEATLNVLVGAEVIFWFYIGECIGKR 61
G+GN+ +S GA+K++++ E N+ + I IG+ GKR
Sbjct: 221 GLGNVSSSRSEGAYKKRSLSEFLQNIPSSKQSI----IGDGPGKR 261
>08_01_0525 +
4564885-4565221,4565337-4565476,4565582-4565677,
4566079-4566146,4566542-4566643,4567492-4567630,
4567758-4567898,4568241-4568297,4568400-4568459,
4568866-4568973,4569834-4569994,4570453-4570531,
4571357-4571490,4571846-4571951,4572244-4572432,
4572595-4572822,4573028-4573183,4573491-4573532,
4573752-4573868,4573945-4574121
Length = 878
Score = 26.6 bits (56), Expect = 8.7
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -2
Query: 228 PKLSELPQIRQGIGNLITSAKTGAWKRQTVKEA-TLNVLVGAE 103
PKL LP++R + N + AW RQT+ EA T V++G E
Sbjct: 89 PKL--LPRLRNVLVNAV------AWNRQTITEASTKEVILGTE 123
>03_02_0663 +
10256898-10258915,10259162-10259248,10259463-10259724,
10259802-10260111,10260535-10260645,10260861-10261090
Length = 1005
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +2
Query: 116 RTFSVASLTVCLFHAPVL--ALVIRLPMPC 199
R+ SV S +VC HAP A V P+PC
Sbjct: 51 RSLSVRSASVCYPHAPSTSGAFVADSPLPC 80
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,926,809
Number of Sequences: 37544
Number of extensions: 163514
Number of successful extensions: 326
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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