Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_J07
(638 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 31 0.19
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 31 0.19
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 29 0.57
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 29 0.57
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 29 0.75
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 28 0.99
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 28 1.3
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe... 27 1.7
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 2.3
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.0
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 27 3.0
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy... 27 3.0
SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein s... 26 4.0
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha... 26 5.3
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 25 7.0
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta... 25 9.2
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 30.7 bits (66), Expect = 0.19
Identities = 15/65 (23%), Positives = 31/65 (47%)
Frame = -2
Query: 484 PTLKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPGDQKV 305
PT KK + ++ K + ++ +E N + VK + L+ ++EK P W + +
Sbjct: 531 PTAKKNNSFKPKLFRRSRELSEKLCNNWSERVKSPSYQLKVREREKLPAWESRRKIMDAI 590
Query: 304 KEEEV 290
+ +V
Sbjct: 591 QHSQV 595
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 30.7 bits (66), Expect = 0.19
Identities = 17/70 (24%), Positives = 36/70 (51%)
Frame = -2
Query: 496 KFVKPTLKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPG 317
K K +++++ + ++ A +++K + ++ KK+ ++D+ K D K K G
Sbjct: 49 KMAKRSVEELKRSADEEASVKRKEKKSKHEHKKH---KKDKPSADKDRISKKDKKKSKKG 105
Query: 316 DQKVKEEEVE 287
K KEE +E
Sbjct: 106 KSKTKEESIE 115
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 29.1 bits (62), Expect = 0.57
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 415 NFRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPGDQ 311
+FRNQ+K ++ L E+ KE W +G DQ
Sbjct: 1070 DFRNQIKSQTERILVLREKKKEDPISWMEGTMEDQ 1104
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 29.1 bits (62), Expect = 0.57
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -2
Query: 457 ENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPGDQK--VKEEEVE 287
+N F K E NF + +K K +FT E+K + K P +QK +K+++ E
Sbjct: 254 DNFFRDFLKVCDECNFNHNIKEFSKCDFTQMFHHFEQKREEKKSMPKEQKKAIKQKKDE 312
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 28.7 bits (61), Expect = 0.75
Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 5/119 (4%)
Frame = -2
Query: 628 KRVCKDYHXRIARLEDXKF--DLEYIVKRK-DMEISDLNSQVNDLRGKFVKPTLKKVSKY 458
+RV + Y ++A+ K ++E KRK + E+ + + K K+ +
Sbjct: 554 QRVLQAYREKVAQQRQAKLLEEIEEENKRKQERELKKIREKEKKRDKKKQLKLAKEEERQ 613
Query: 457 ENKFAKLQKKAAE--FNFRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPGDQKVKEEEVE 287
+ +L ++AA+ + Q + KK+E + ++EKK + + ++K K++E E
Sbjct: 614 RREAERLAEQAAQKALEAKRQEEARKKREEQRLKREQEKKQQELERQKREEKQKQKERE 672
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 28.3 bits (60), Expect = 0.99
Identities = 21/88 (23%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Frame = -2
Query: 550 RKDMEISDLNSQVNDLRGKFVKPTLKKVS-KYENKFAKLQKKAAEFNFRNQLKVVKKKEF 374
R ++E +L QVN+L+G V P S ++ N ++ KA ++Q+ K K F
Sbjct: 1423 RLNLEKHNLEKQVNELKGAEVSPQPTGQSLQHVNLAHAIELKA----LKDQINSEKAKMF 1478
Query: 373 TLEEEDKEKKPDWSKGKPGDQKVKEEEV 290
+++ + ++++ + K +KV ++ +
Sbjct: 1479 SVQVQYEKREQELQKRIASLEKVNKDSL 1506
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = -2
Query: 517 QVNDLRGKFVKPTLKKVSK-YENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEDKEKKP 341
Q N +RG+ + + K+ K Y+N+ ++K + +++ + + + P
Sbjct: 418 QGNFVRGQKLHLEISKIQKKYQNQIENMKKGSHVTKSNQYSEMIGNLPYPTSSRKRTRSP 477
Query: 340 DWSKGKPGDQK 308
SKGK D+K
Sbjct: 478 LMSKGKSYDRK 488
>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 306
Score = 27.5 bits (58), Expect = 1.7
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -2
Query: 469 VSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEE-DKEKK 344
+ K +NK + Q+ + +N+ K+ ++KE EEE D EKK
Sbjct: 1 MGKIKNKIVRQQQYMKALHQKNKDKLERRKERAKEEEKDPEKK 43
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.1 bits (57), Expect = 2.3
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = -2
Query: 553 KRKDMEISDLNSQVNDLRGKFVKPTLKK-VSKYENKFAKLQKKAAEFNFRNQLKVVKKKE 377
K+ D I+ S + G+ + P L + + +E++F Q+ AE+ + Q + + +
Sbjct: 1368 KQTDTGITHFRSGMTT-NGEHLIPNLYRYIQPWESEFIDSQRVWAEYAMKRQEALQQNRR 1426
Query: 376 FTLEEEDKEKKPDWSKGKP 320
TLE + + W +G P
Sbjct: 1427 LTLE----DLEDSWDRGIP 1441
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 26.6 bits (56), Expect = 3.0
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
Frame = -2
Query: 589 LEDXKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLK-KVSKYENKFAKLQKK-AAEF 416
LE L + ++KD +I +L ++NDL + TLK E K + K+ AA
Sbjct: 149 LEKQVKTLHDLNEQKDKKIKELKERINDLTYDY--ETLKANADDSEGKQTLVSKREAALE 206
Query: 415 NFRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPGDQKVKEEEVE 287
F+++L ++++ E E K D K + D + + +VE
Sbjct: 207 EFQSKL-LIRENEINKRELKMNGKEDDLKKREKDLENRLLKVE 248
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 26.6 bits (56), Expect = 3.0
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = -2
Query: 628 KRVCKDYHXRIARLEDXKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLKKVSKYE 455
+R+C+ + + +DL++ E S L+ QVNDL + K T +K+S+ +
Sbjct: 897 QRLCEGRTKELLNSQQKLYDLKHSYSSVMTEKSKLSDQVNDLTEQ-AKITQRKLSEVQ 953
>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 327
Score = 26.6 bits (56), Expect = 3.0
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -2
Query: 391 VKKKEFTLEEEDKEKKPDWSKGKPGDQKVKEEEVE 287
++ E+ L++E+KE+K K + +K KE+E E
Sbjct: 275 IESGEYFLKKEEKERKKRAEKKEQQKEKKKEKEKE 309
>SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein
subunit L40|Schizosaccharomyces pombe|chr 1|||Manual
Length = 279
Score = 26.2 bits (55), Expect = 4.0
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -2
Query: 433 KKAAEFNFRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPGDQ 311
KK + R +++ K ++DK KP+ GKP D+
Sbjct: 22 KKPLPLHMRTKIREHLNKSDPTVKDDKSAKPELPFGKPADR 62
>SPCC364.06 |nap1||nucleosome assembly protein Nap1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 393
Score = 25.8 bits (54), Expect = 5.3
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 12/96 (12%)
Frame = -2
Query: 571 DLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLKKVSKYENKFAKLQKKAAEF----NFRN 404
+L V+R+ + L + +DL +F K + Y K+A + K+ +E +
Sbjct: 70 ELPEAVQRRISGLRGLQKRYSDLESQFQKELFELEKAYAKKYAPIFKRRSEVVRGADEPT 129
Query: 403 QLKVVK--------KKEFTLEEEDKEKKPDWSKGKP 320
+ ++ K KKE T E K++ D +KG P
Sbjct: 130 EEEIKKGEAADENEKKEPTSSESKKQEGGDDTKGIP 165
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 8 LFFFLRVRVNSIWSLHDIR*VMPVGRHKKTGNLGQVT 118
LFF + ++ S SL + +MPV +H + G +T
Sbjct: 99 LFFKMGIKFLSFASLLGVLIIMPVNKHFRGDAFGNIT 135
>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 25.0 bits (52), Expect = 9.2
Identities = 21/68 (30%), Positives = 33/68 (48%)
Frame = -2
Query: 496 KFVKPTLKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPG 317
K +P++ K K E K K ++A+ +K V+K LE KEK+ K
Sbjct: 206 KIQRPSVIKKDKKEKKEGKPSQEAS-------VKSVEKAPKGLEGAKKEKQNKKEKKDKK 258
Query: 316 DQKVKEEE 293
D+K K+E+
Sbjct: 259 DKKDKKEK 266
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,308,536
Number of Sequences: 5004
Number of extensions: 43692
Number of successful extensions: 170
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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