Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_J06
(672 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch... 134 1e-32
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 27 3.3
SPAC19B12.11c |||zinc finger protein|Schizosaccharomyces pombe|c... 26 4.3
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 26 5.7
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo... 26 5.7
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 26 5.7
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe... 25 7.5
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 7.5
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol... 25 9.9
SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|ch... 25 9.9
SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr 1... 25 9.9
>SPBC18E5.10 |||iron sulfur cluster assembly protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 134 bits (323), Expect = 1e-32
Identities = 66/175 (37%), Positives = 97/175 (55%), Gaps = 1/175 (0%)
Frame = -3
Query: 670 FNISGHVNTPCTVEEEMSIPLKELIERHAGGVTGGWDNLXAIIPGGSSTPLIPKNVCETV 491
F+ISG VN P +E MSIPLK+LIE +AGGV GGW+ L I PGG + ++ KN CE V
Sbjct: 274 FSISGEVNEPNVIEACMSIPLKDLIENYAGGVRGGWNKLVGIFPGGPCSGILNKNQCEQV 333
Query: 490 LMDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKI 311
MDFD L A +SLGT ++IV++ I +++ FY +C C CR+GV + +
Sbjct: 334 TMDFDSLKALDSSLGTGSVIVLNDHDQIFESLLNFAKFYSTNTCHTCPVCRDGVEDVIET 393
Query: 310 IYRFVDGNASPKEI-DMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELERR 149
+ DG+A ++ DM + + C GD + + R+F ++ R
Sbjct: 394 LKGLKDGHAHLSQLKDMFSKFNMPSSSKVFCGFGDSMRHQIHSIQRNFPDQITFR 448
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -3
Query: 322 MNKIIYRFVDGNASPKEIDMLWEISKQIEG 233
+NK + ++VD +P E L+EIS Q+EG
Sbjct: 217 INKPVTKYVDN--TPVEFGWLYEISYQLEG 244
>SPAC19B12.11c |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 124
Score = 26.2 bits (55), Expect = 4.3
Identities = 20/57 (35%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Frame = -2
Query: 590 ARGRSHRRXGQPXRHHTR---RLLDPAHTQERLRDSVDGLRRSSSRADLPGHGSHHC 429
AR R H G TR R LD H + D L DLPG G H+C
Sbjct: 5 ARKRKHHSNGNHALFRTRVYGRDLDQIHNDLTESEKFDKLPIDP---DLPGLGQHYC 58
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 25.8 bits (54), Expect = 5.7
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = -3
Query: 412 DIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIE 236
D+V+A+ R+ + Y + GQ GV W+ + + P+ + ++E++K E
Sbjct: 709 DVVEAMFRIALIYLNGLLGQKRNISLGVQWLERAC-----KSKGPESVRAMYELAKIYE 762
>SPAC9E9.10c |cbh1|cbh|centromere binding protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 514
Score = 25.8 bits (54), Expect = 5.7
Identities = 8/26 (30%), Positives = 17/26 (65%)
Frame = +2
Query: 200 RGSVAQSADRVPFDLFRNFPQHVDFF 277
+ +V Q+ + + F++FR +P H+ F
Sbjct: 142 QSAVNQALESIKFEVFREYPVHIQEF 167
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 25.8 bits (54), Expect = 5.7
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = -3
Query: 217 LGDGAAWPVQGLIRHFRPELERRMQEYSAAHGPSKAERLY**CNTRRTSTLH 62
LGD + Q L ++E + E ++ GP+ +R+Y +++ST H
Sbjct: 867 LGDEYLYSEQSLNHEEEEQMEEELSEIFSSGGPNVVDRVY----LKKSSTRH 914
>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 143
Score = 25.4 bits (53), Expect = 7.5
Identities = 17/60 (28%), Positives = 21/60 (35%)
Frame = -1
Query: 204 PRGRCRDSYVTSGPSSSDACRSTRPRTGRAKPSACTSSAIRAERQLFTLRVSKEPLYRER 25
P G Y P SSD RS G A S +R R + + PL+ R
Sbjct: 51 PPGTTTVVYQKDVPRSSDGSRSMTAGLGGFMVGALAGSVLRGHRAYYAPPPPRGPLFGPR 110
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 7.5
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = -3
Query: 331 VSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLI 179
VSW NK+ + GNA+ E +W++ + + + LG G +
Sbjct: 168 VSWNNKVSHILASGNAT--EYTTVWDVKLKRQVLNLSYLGAAGVSAATGAV 216
>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 797
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 196 PVQGLIRHFRPELERRMQEYSAAHGPSKA 110
PVQ L++ RP+L R + E + HG ++
Sbjct: 641 PVQPLLKQ-RPQLHRALTESATLHGNDRS 668
>SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 257
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 544 IPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLG 446
+P G+ TPLIP VL++F +A SLG
Sbjct: 154 LPSGTPTPLIPL----LVLIEFVSYIARGLSLG 182
>SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 670 FNISGHVNTPCTVEEEMSIPLKELIE 593
+NI+GH + E++S+P EL+E
Sbjct: 89 WNIAGHFMFSHKIWEDLSLPQNELLE 114
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,621,255
Number of Sequences: 5004
Number of extensions: 52907
Number of successful extensions: 160
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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