Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_J06
(672 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1481 + 26860051-26860104,26861114-26861143,26861714-26863174 297 5e-81
02_02_0581 + 11770511-11770527,11770754-11771612,11771652-117717... 32 0.48
09_04_0371 - 17020539-17020607,17020697-17020747,17020888-170210... 31 0.84
09_04_0082 + 14408962-14409436,14413356-14413780,14414067-14414528 31 0.84
03_03_0107 + 14504065-14504448,14504545-14504922,14506011-145066... 30 1.5
11_01_0656 - 5301048-5301441,5301779-5301976,5302056-5302228,530... 30 1.9
05_01_0203 + 1459600-1460010 29 2.6
02_03_0099 + 15206282-15206917 29 2.6
09_04_0179 - 15366119-15366916 29 3.4
10_08_0959 - 21813756-21814097,21814462-21814570,21814688-218147... 29 4.5
02_02_0652 - 12651163-12653210,12653327-12653627 29 4.5
01_06_1475 + 37634831-37636297 29 4.5
01_06_0871 - 32604968-32605470,32605546-32605722,32605821-32606355 29 4.5
01_07_0122 - 41196081-41196205,41197561-41198245,41198961-411993... 28 5.9
07_01_0615 + 4551557-4551835 28 7.8
06_01_1103 + 9085156-9085602 28 7.8
05_06_0186 - 26207298-26208548,26208743-26208853,26209286-262095... 28 7.8
02_05_0968 + 33156585-33156941,33158510-33159902,33160035-331601... 28 7.8
02_05_0878 + 32437136-32437522 28 7.8
02_05_0312 - 27792127-27792360,27793282-27793412,27793534-27793837 28 7.8
01_01_0195 + 1697447-1697691,1698150-1698808,1699754-1701570,170... 28 7.8
>07_03_1481 + 26860051-26860104,26861114-26861143,26861714-26863174
Length = 514
Score = 297 bits (729), Expect = 5e-81
Identities = 134/177 (75%), Positives = 151/177 (85%)
Frame = -3
Query: 670 FNISGHVNTPCTVEEEMSIPLKELIERHAGGVTGGWDNLXAIIPGGSSTPLIPKNVCETV 491
F +SGHVN PCTVEEEMSIPLKELIE+H GGV GGWDNL AIIPGGSS PL+PK++C+ V
Sbjct: 327 FCVSGHVNKPCTVEEEMSIPLKELIEKHCGGVRGGWDNLLAIIPGGSSVPLLPKHICDDV 386
Query: 490 LMDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKI 311
LMD+D L A Q+ LGTAA+IVMDKSTD+V AIARL FYKHESCGQCTPCREG W+ I
Sbjct: 387 LMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMI 446
Query: 310 IYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQE 140
+ R GNA +EIDML E++KQIEGHTICALGD AAWPVQGLIRHFRPELERR++E
Sbjct: 447 MERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIRE 503
>02_02_0581 +
11770511-11770527,11770754-11771612,11771652-11771749,
11772903-11773631,11775159-11775231,11775698-11776066,
11777009-11777038
Length = 724
Score = 31.9 bits (69), Expect = 0.48
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = -1
Query: 267 TCCGKFRNKSKGTRSALWATEPRGRCRDSYVTSGPSSSDACRSTRPRTGRAKPSACTSSA 88
T + R K K TRS L + +G + GPS++DA T P +G A +A +
Sbjct: 632 TARSEMRGKRKRTRSKLQQSRGQGCWPIAIHVIGPSTADARHPTAPLSGAAAAAAAIQAT 691
Query: 87 IRA 79
A
Sbjct: 692 TAA 694
>09_04_0371 -
17020539-17020607,17020697-17020747,17020888-17021058,
17023296-17023404,17023570-17023676,17024429-17024640,
17024805-17024952
Length = 288
Score = 31.1 bits (67), Expect = 0.84
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = -3
Query: 379 FYKHESCGQCTPCREGVSW--MNKIIYRFVDGNASPKEIDMLWEISKQIE 236
+Y+++ PC EGV W M+KI G+AS ++ID+L ++ +E
Sbjct: 226 YYRYDGSLTTPPCTEGVIWTIMSKI------GDASKEQIDLLKTVATTVE 269
>09_04_0082 + 14408962-14409436,14413356-14413780,14414067-14414528
Length = 453
Score = 31.1 bits (67), Expect = 0.84
Identities = 23/89 (25%), Positives = 39/89 (43%)
Frame = -1
Query: 294 MVMLHRKKSTCCGKFRNKSKGTRSALWATEPRGRCRDSYVTSGPSSSDACRSTRPRTGRA 115
+++L +K+ST R G+R + RG S+ + G +S + ST A
Sbjct: 352 VIILSKKQSTLEEPTRPGVPGSRYRRRSYGTRGGGGGSHFSVGSTSGTSSPSTSTTASHA 411
Query: 114 KPSACTSSAIRAERQLFTLRVSKEPLYRE 28
SA +++ T+R PL+RE
Sbjct: 412 TTSAASNAMTTTTSSTHTMRSQGLPLHRE 440
>03_03_0107 +
14504065-14504448,14504545-14504922,14506011-14506619,
14507110-14507237,14507829-14507832
Length = 500
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -3
Query: 238 EGHTICALGDGAAWPVQGLIRHFRPELERRMQEYSAAHGPSKAERL 101
EG T+C + A PV+ + R P++ R + E +HG S+ E L
Sbjct: 148 EGRTMCKVAAKTA-PVRRIERAVDPDIARLLDETDVSHGGSEDEGL 192
>11_01_0656 -
5301048-5301441,5301779-5301976,5302056-5302228,
5302691-5302935,5303014-5303191,5303578-5303760,
5303858-5303962,5304621-5304758,5304846-5305802
Length = 856
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -3
Query: 571 GGW-DNLXAIIPGGSSTPLIPKNVCETVLMDFDG 473
G W D L I+P GS P P N+ ++ +++DG
Sbjct: 8 GSWEDMLRRILPPGSPIPEAPPNLDYSIALEYDG 41
>05_01_0203 + 1459600-1460010
Length = 136
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 314 LVHPGDTFAARSALAAGLVLVEHDESSDGLHDVS*LVHDNDG-CRAQ 451
+ H D+ A+ S LA + ++ D+ DG + + LV DG CR +
Sbjct: 54 VTHSKDSIASASLLATSPLFLQDDDDDDGENVIGDLVSAEDGSCRCK 100
>02_03_0099 + 15206282-15206917
Length = 211
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 308 YNLVHPG-DTFAARSALAAGLVLVEHDESSDGLHDVS*LVHD 430
Y LV P D AA +A A +V+ E DE+ GLH V LV D
Sbjct: 70 YALVLPDRDAAAASAAETAEVVVGEADEAMAGLHGVDLLVVD 111
>09_04_0179 - 15366119-15366916
Length = 265
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -2
Query: 485 GLRRSSSRADLPGHGSHHCHGQVN*HREGHRSTH 384
G R +S GHG H +GQ + + EGH S H
Sbjct: 190 GQRNASGSGYGDGHGEGHGYGQGSGYGEGHGSGH 223
>10_08_0959 - 21813756-21814097,21814462-21814570,21814688-21814740,
21814849-21815049,21815320-21815433,21815513-21815671,
21816490-21816849,21816928-21817149,21817967-21818093,
21818887-21819023,21819169-21819292,21819665-21820174,
21820255-21820436,21820812-21820862,21821114-21821266,
21821339-21821437,21821519-21821861,21821957-21822030,
21822105-21823025,21823133-21823257,21823419-21823461,
21823574-21823762,21824814-21825074,21825228-21825387,
21826200-21826363,21826523-21827009,21827090-21827431,
21827519-21827836,21828001-21828041,21828136-21828388,
21829158-21829261,21830198-21830386,21830543-21831196,
21831320-21831610,21831739-21831882,21832107-21832205,
21832549-21832657,21832739-21832923,21833008-21833121,
21833270-21833401,21833483-21833815,21833945-21834436,
21834773-21834847,21834917-21835066,21835143-21835241,
21835463-21835547,21837188-21837375,21837513-21837647,
21837729-21837849,21838127-21838194,21838275-21838370,
21838450-21838554,21838665-21838980,21839053-21839142,
21840011-21840181,21840850-21841010,21841088-21841270,
21841839-21841940,21842515-21842632,21842704-21842798,
21842972-21843022,21843107-21843241,21843333-21843436,
21844249-21844414,21844649-21844773,21845220-21845316
Length = 4181
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +3
Query: 462 AATRPSKSINTVSQ---TFLGMSGVEEPPGMMAXRLSXPPVT 578
A T S S+ TV TFL SG +PP +A +L+ PP +
Sbjct: 2374 ARTSESFSLWTVDNDVGTFLVRSGFRKPPRRLALKLAGPPTS 2415
>02_02_0652 - 12651163-12653210,12653327-12653627
Length = 782
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = +1
Query: 82 AYCTTSTGARLCSA---RARPSTPACVARARAGSDV*VPAPATRLR 210
+Y TT++GA+ A R P+T A +A + + + + PAP+T +
Sbjct: 123 SYATTTSGAKSIPAATERVFPATKASLASSTSSTTMTTPAPSTETK 168
>01_06_1475 + 37634831-37636297
Length = 488
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -1
Query: 225 SALWATEPRGRCRDSYVTSGPSSSDACRSTRPRTGRAKPSAC 100
+A AT P R + V P + DAC+ P+T A S C
Sbjct: 126 TACGATAPFNPVRSTTVADVPCTDDACQQFAPQTCGAGASEC 167
>01_06_0871 - 32604968-32605470,32605546-32605722,32605821-32606355
Length = 404
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 287 ITIDESVYNLVHPGDTFAARSALAAGLVLVEHDESSDGLHDV 412
+T+ S Y LV P D A S++ GL ++H S G V
Sbjct: 165 VTLGASDYPLVTPDDLLYAFSSVRRGLSFIDHRMDSGGAEAV 206
>01_07_0122 -
41196081-41196205,41197561-41198245,41198961-41199329,
41199405-41199514,41200539-41200833
Length = 527
Score = 28.3 bits (60), Expect = 5.9
Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = -2
Query: 485 GLRRSSSRADLPGHGSHHCHGQVN*HREGHRSTHH--VLQARVLRPVHSLPR 336
G + S A + HG HH H H GH + H QA V PVH PR
Sbjct: 338 GGSEAPSPAPMHHHGHHHHHH----HHHGHEDSRHSAPAQAPVHYPVHE-PR 384
>07_01_0615 + 4551557-4551835
Length = 92
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 165 PSSSDACRSTRPRTGRAKPSACTSSAIR 82
PS++ AC RTG +P AC S +R
Sbjct: 55 PSAAGACSCCCLRTGSRQPGACCCSPLR 82
>06_01_1103 + 9085156-9085602
Length = 148
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -2
Query: 635 RGGGDEHPAQGAH*EARGRSHRRXGQPXRHHTRRLLDPA 519
RGGG A+G + RS GQP TRR + PA
Sbjct: 42 RGGGRCGVAEGGDGDVGRRSGAATGQPEEMSTRRKVRPA 80
>05_06_0186 -
26207298-26208548,26208743-26208853,26209286-26209507,
26209623-26209658
Length = 539
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -1
Query: 174 TSGPSSSDACRSTRPRTGRAKPSACTSSAIRAERQLFT 61
+SG S T ++GRA PS C +A+ ++Q+F+
Sbjct: 273 SSGNSLFSPFSFTVQKSGRALPSPCLRTALSCKQQMFS 310
>02_05_0968 +
33156585-33156941,33158510-33159902,33160035-33160118,
33160216-33160265
Length = 627
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 441 AVPREVCAATRPSKSINTVSQTFLGMSGVEEPPGMMA 551
AV CAA P++S +T T G +G PP A
Sbjct: 254 AVLSNTCAAVAPAQSCSTEQATVHGETGNASPPSPFA 290
>02_05_0878 + 32437136-32437522
Length = 128
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = -3
Query: 670 FNISGHVNTPCTVEEEMSIPLKELIERH---AGGVTGGWDNLXAIIPGGSS 527
++ +G + PC+V+E + L+ L+ER AGG GG + + GG S
Sbjct: 62 YDSAGPLRLPCSVDE--FLRLRSLVERETHAAGGGGGGSSSPHRVHAGGGS 110
>02_05_0312 - 27792127-27792360,27793282-27793412,27793534-27793837
Length = 222
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = -1
Query: 231 TRSALWATEPRGRCRDSYVTSGPSSSDACRSTRPRTGRAKPSACTSSAIRAERQLFTLRV 52
T S+L+ P + S PS+S A S R R +PS ++A++AE Q
Sbjct: 3 TASSLFLASPVATAPTARARSTPSASPARPSLRLR----RPSTLAAAAVQAEHQPAVAAA 58
Query: 51 SKEP 40
K P
Sbjct: 59 PKPP 62
>01_01_0195 +
1697447-1697691,1698150-1698808,1699754-1701570,
1701700-1701771
Length = 930
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 46 LRYSQSEELTFGAYCTTSTGARLCSARARPSTPAC 150
LRYS S L FG + GA +C +P+ C
Sbjct: 580 LRYSISTMLNFGIFGMPMVGADICGFYPQPTEELC 614
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,186,421
Number of Sequences: 37544
Number of extensions: 448331
Number of successful extensions: 1665
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1661
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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