Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_J06
(672 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50109-8|CAA90435.1| 479|Caenorhabditis elegans Hypothetical pr... 326 7e-90
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 34 0.11
U39653-2|AAM69064.1| 1092|Caenorhabditis elegans Hypothetical pr... 30 1.3
U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical pr... 30 1.3
AL021488-11|CAN86609.1| 1245|Caenorhabditis elegans Hypothetical... 29 3.0
AL021488-10|CAA16368.2| 1247|Caenorhabditis elegans Hypothetical... 29 3.0
AL021488-9|CAC42378.2| 1245|Caenorhabditis elegans Hypothetical ... 29 3.0
AL021483-11|CAN86637.1| 1245|Caenorhabditis elegans Hypothetical... 29 3.0
AL021483-10|CAA16349.2| 1247|Caenorhabditis elegans Hypothetical... 29 3.0
AL021483-9|CAC42374.2| 1245|Caenorhabditis elegans Hypothetical ... 29 3.0
Z70752-3|CAA94755.3| 654|Caenorhabditis elegans Hypothetical pr... 29 4.0
AY204202-1|AAO39203.1| 339|Caenorhabditis elegans nuclear recep... 29 4.0
AY204201-1|AAO39202.1| 409|Caenorhabditis elegans nuclear recep... 29 4.0
AY204200-1|AAO39201.1| 304|Caenorhabditis elegans nuclear recep... 29 4.0
AF408754-1|AAO27833.1| 418|Caenorhabditis elegans nuclear recep... 29 4.0
AC084155-11|AAQ91893.1| 304|Caenorhabditis elegans Nuclear horm... 29 4.0
AC084155-10|AAG23368.3| 418|Caenorhabditis elegans Nuclear horm... 29 4.0
Z66497-8|CAA91285.2| 433|Caenorhabditis elegans Hypothetical pr... 28 5.3
AJ745071-1|CAG32977.1| 433|Caenorhabditis elegans core alpha1,3... 28 5.3
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 28 5.3
U00035-6|AAA50647.1| 315|Caenorhabditis elegans Hypothetical pr... 28 6.9
AM231686-1|CAJ77755.1| 315|Caenorhabditis elegans GDP-4-keto-6-... 28 6.9
AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exteri... 28 6.9
AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector ... 28 6.9
Z78201-4|CAB01590.2| 911|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z78019-10|CAE46691.1| 911|Caenorhabditis elegans Hypothetical p... 27 9.2
Z74026-1|CAD56284.1| 1093|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z19152-7|CAA79539.2| 643|Caenorhabditis elegans Hypothetical pr... 27 9.2
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 27 9.2
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 27 9.2
>Z50109-8|CAA90435.1| 479|Caenorhabditis elegans Hypothetical
protein C09H10.3 protein.
Length = 479
Score = 326 bits (802), Expect = 7e-90
Identities = 144/178 (80%), Positives = 160/178 (89%)
Frame = -3
Query: 670 FNISGHVNTPCTVEEEMSIPLKELIERHAGGVTGGWDNLXAIIPGGSSTPLIPKNVCETV 491
F ISG VN PCTVEEEMS+PLK+LIERH GGV GGWDNL AIIPGGSS PL+PKNVC+TV
Sbjct: 287 FCISGQVNNPCTVEEEMSVPLKDLIERHCGGVIGGWDNLLAIIPGGSSVPLMPKNVCDTV 346
Query: 490 LMDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKI 311
LMDFD LVAAQ+ LGTAA+IVM+K TDIVK IARL +FYKHESCGQCTPCREG +W+NK+
Sbjct: 347 LMDFDALVAAQSGLGTAAVIVMNKQTDIVKCIARLSLFYKHESCGQCTPCREGCNWLNKM 406
Query: 310 IYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQEY 137
++RFVDG A P EIDM+WE+SKQIEGHTICALGD AAWPVQGLIRHFRPELERRM E+
Sbjct: 407 MWRFVDGKAKPSEIDMMWELSKQIEGHTICALGDAAAWPVQGLIRHFRPELERRMAEF 464
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 33.9 bits (74), Expect = 0.11
Identities = 28/90 (31%), Positives = 33/90 (36%), Gaps = 1/90 (1%)
Frame = -2
Query: 647 HXVHRGGGDEHPAQGAH*EARGRSHRRXGQPXRHHTRRLLDPAHTQERLRDSVDGLRRSS 468
H H+ G EH AH + G HR G+ H T PAH E + G
Sbjct: 381 HHEHKEG--EHHEHAAHHDEHGVHHRHHGE--HHGTHH--SPAHHGEH--GTHHGHHGEH 432
Query: 467 SRADLP-GHGSHHCHGQVN*HREGHRSTHH 381
A GH H HG + GH HH
Sbjct: 433 HHAPAHHGHHESHGHGHHSPAHHGHHGEHH 462
Score = 33.1 bits (72), Expect = 0.18
Identities = 25/95 (26%), Positives = 27/95 (28%), Gaps = 5/95 (5%)
Frame = -2
Query: 650 EHXVHRGGGDEH---PAQGAH*EARGRSHRRXGQPXRH--HTRRLLDPAHTQERLRDSVD 486
EH H G EH PA H E+ G H H H H E
Sbjct: 421 EHGTHHGHHGEHHHAPAHHGHHESHGHGHHSPAHHGHHGEHHHAPAHHGHHGEHHHAPAH 480
Query: 485 GLRRSSSRADLPGHGSHHCHGQVN*HREGHRSTHH 381
HGSHH H E H + H
Sbjct: 481 HGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAH 515
Score = 33.1 bits (72), Expect = 0.18
Identities = 29/97 (29%), Positives = 32/97 (32%), Gaps = 4/97 (4%)
Frame = -2
Query: 659 GSREHXVHRGGGDEHPAQGAH*EARGRSHRRXGQPXRHHTRRLLD---PAHTQERLRDSV 489
GS H G EH AH G H G HH PAH V
Sbjct: 553 GSHHSPAHHGHHGEHHHAPAHHGHHGH-HGSHGVHHGHHESHGHGHHAPAHHGHHGEHGV 611
Query: 488 D-GLRRSSSRADLPGHGSHHCHGQVN*HREGHRSTHH 381
G + A HG+HH H + H E H HH
Sbjct: 612 HHGHHGAGYGAHHGHHGAHHHHAPHHEHHEHHGDHHH 648
Score = 32.3 bits (70), Expect = 0.32
Identities = 27/90 (30%), Positives = 30/90 (33%)
Frame = -2
Query: 650 EHXVHRGGGDEHPAQGAH*EARGRSHRRXGQPXRHHTRRLLDPAHTQERLRDSVDGLRRS 471
EH H G EH AH G G HH+ PAH G
Sbjct: 521 EHGTHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHS-----PAHHGHH------G-EHH 568
Query: 470 SSRADLPGHGSHHCHGQVN*HREGHRSTHH 381
+ A HG H HG + H E H HH
Sbjct: 569 HAPAHHGHHGHHGSHGVHHGHHESHGHGHH 598
Score = 31.9 bits (69), Expect = 0.43
Identities = 25/94 (26%), Positives = 28/94 (29%)
Frame = -2
Query: 659 GSREHXVHRGGGDEHPAQGAH*EARGRSHRRXGQPXRHHTRRLLDPAHTQERLRDSVDGL 480
GS H G EH AH G G HH H + G
Sbjct: 495 GSHHSPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGEHHHAPAHHGHHGEHGTHHGHHGS 554
Query: 479 RRSSSRADLPGHGSHHCHGQVN*HREGHRSTHHV 378
S A HG HH H + GH +H V
Sbjct: 555 HHSP--AHHGHHGEHH-HAPAHHGHHGHHGSHGV 585
Score = 31.5 bits (68), Expect = 0.56
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -2
Query: 449 GHGSHHCHGQVN*HREGHRSTHHV 378
GH +HH HG H E H HHV
Sbjct: 79 GHHTHHAHGAHPGHHEVHHHHHHV 102
Score = 28.3 bits (60), Expect = 5.3
Identities = 25/97 (25%), Positives = 30/97 (30%), Gaps = 4/97 (4%)
Frame = -2
Query: 659 GSREHXVHRGGGDEHPAQGAH*EARGRSHR-RXGQPXRHHTRRLLDPAHTQERLRDSVDG 483
G H H G H H E G H G HH H + G
Sbjct: 619 GYGAHHGHHGAHHHHAPHHEHHEHHGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTHHG 678
Query: 482 LRRSSSRADLPGHGSHHCHGQVN*HREGH---RSTHH 381
S + HG+HH HG + GH + HH
Sbjct: 679 AHHSPAHHG--HHGAHHEHGAHHGAHHGHHDDKENHH 713
>U39653-2|AAM69064.1| 1092|Caenorhabditis elegans Hypothetical
protein T13H2.5b protein.
Length = 1092
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1
Query: 94 TSTGARLCSARARPSTPACVARARAGSD 177
T +R CS+ RPS+P+ V R R GSD
Sbjct: 19 TRRPSRPCSSYDRPSSPSVVIRERLGSD 46
>U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical protein
T13H2.5a protein.
Length = 2471
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1
Query: 94 TSTGARLCSARARPSTPACVARARAGSD 177
T +R CS+ RPS+P+ V R R GSD
Sbjct: 1398 TRRPSRPCSSYDRPSSPSVVIRERLGSD 1425
>AL021488-11|CAN86609.1| 1245|Caenorhabditis elegans Hypothetical
protein Y45F10A.6c protein.
Length = 1245
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 149 ASLELGPEVTYESLHRPRGSVAQSADRVPFDLFRNFPQHVDF 274
A + L P E LH+ +G + + + + DL R+ P+H F
Sbjct: 507 AEMALNPGYYRELLHKNQGVYSVALEEIERDLHRSLPEHPAF 548
>AL021488-10|CAA16368.2| 1247|Caenorhabditis elegans Hypothetical
protein Y45F10A.6a protein.
Length = 1247
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 149 ASLELGPEVTYESLHRPRGSVAQSADRVPFDLFRNFPQHVDF 274
A + L P E LH+ +G + + + + DL R+ P+H F
Sbjct: 507 AEMALNPGYYRELLHKNQGVYSVALEEIERDLHRSLPEHPAF 548
>AL021488-9|CAC42378.2| 1245|Caenorhabditis elegans Hypothetical
protein Y45F10A.6b protein.
Length = 1245
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 149 ASLELGPEVTYESLHRPRGSVAQSADRVPFDLFRNFPQHVDF 274
A + L P E LH+ +G + + + + DL R+ P+H F
Sbjct: 507 AEMALNPGYYRELLHKNQGVYSVALEEIERDLHRSLPEHPAF 548
>AL021483-11|CAN86637.1| 1245|Caenorhabditis elegans Hypothetical
protein Y45F10A.6c protein.
Length = 1245
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 149 ASLELGPEVTYESLHRPRGSVAQSADRVPFDLFRNFPQHVDF 274
A + L P E LH+ +G + + + + DL R+ P+H F
Sbjct: 507 AEMALNPGYYRELLHKNQGVYSVALEEIERDLHRSLPEHPAF 548
>AL021483-10|CAA16349.2| 1247|Caenorhabditis elegans Hypothetical
protein Y45F10A.6a protein.
Length = 1247
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 149 ASLELGPEVTYESLHRPRGSVAQSADRVPFDLFRNFPQHVDF 274
A + L P E LH+ +G + + + + DL R+ P+H F
Sbjct: 507 AEMALNPGYYRELLHKNQGVYSVALEEIERDLHRSLPEHPAF 548
>AL021483-9|CAC42374.2| 1245|Caenorhabditis elegans Hypothetical
protein Y45F10A.6b protein.
Length = 1245
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 149 ASLELGPEVTYESLHRPRGSVAQSADRVPFDLFRNFPQHVDF 274
A + L P E LH+ +G + + + + DL R+ P+H F
Sbjct: 507 AEMALNPGYYRELLHKNQGVYSVALEEIERDLHRSLPEHPAF 548
>Z70752-3|CAA94755.3| 654|Caenorhabditis elegans Hypothetical
protein F25B3.3 protein.
Length = 654
Score = 28.7 bits (61), Expect = 4.0
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = -1
Query: 273 KSTCCGKFRNKSKG--TRSALWATEPRGRCRDSYVTSGPSSSDACRSTRPRTGRAKPSAC 100
KS + R KS TR+A W PRG R + + RS+RPRT A ++
Sbjct: 535 KSNAVAECRRKSSSNLTRAAEWFASPRGSMRSRIINT------CKRSSRPRTVSAVVTSP 588
Query: 99 TS 94
T+
Sbjct: 589 TT 590
>AY204202-1|AAO39203.1| 339|Caenorhabditis elegans nuclear receptor
NHR-114 protein.
Length = 339
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 471 RPSKSINTVSQTFLGMSGVEEPPGMMAXRLSXPPVTP 581
RP K + T S G PP + +LS PP++P
Sbjct: 100 RPKKELKTTSDCSSD-EGASTPPSVSPLQLSPPPISP 135
>AY204201-1|AAO39202.1| 409|Caenorhabditis elegans nuclear receptor
NHR-114 protein.
Length = 409
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 471 RPSKSINTVSQTFLGMSGVEEPPGMMAXRLSXPPVTP 581
RP K + T S G PP + +LS PP++P
Sbjct: 91 RPKKELKTTSDCSSD-EGASTPPSVSPLQLSPPPISP 126
>AY204200-1|AAO39201.1| 304|Caenorhabditis elegans nuclear receptor
NHR-114 protein.
Length = 304
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 471 RPSKSINTVSQTFLGMSGVEEPPGMMAXRLSXPPVTP 581
RP K + T S G PP + +LS PP++P
Sbjct: 100 RPKKELKTTSDCSSD-EGASTPPSVSPLQLSPPPISP 135
>AF408754-1|AAO27833.1| 418|Caenorhabditis elegans nuclear receptor
protein protein.
Length = 418
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 471 RPSKSINTVSQTFLGMSGVEEPPGMMAXRLSXPPVTP 581
RP K + T S G PP + +LS PP++P
Sbjct: 100 RPKKELKTTSDCSSD-EGASTPPSVSPLQLSPPPISP 135
>AC084155-11|AAQ91893.1| 304|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 114, isoform b protein.
Length = 304
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 471 RPSKSINTVSQTFLGMSGVEEPPGMMAXRLSXPPVTP 581
RP K + T S G PP + +LS PP++P
Sbjct: 100 RPKKELKTTSDCSSD-EGASTPPSVSPLQLSPPPISP 135
>AC084155-10|AAG23368.3| 418|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 114, isoform a protein.
Length = 418
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 471 RPSKSINTVSQTFLGMSGVEEPPGMMAXRLSXPPVTP 581
RP K + T S G PP + +LS PP++P
Sbjct: 100 RPKKELKTTSDCSSD-EGASTPPSVSPLQLSPPPISP 135
>Z66497-8|CAA91285.2| 433|Caenorhabditis elegans Hypothetical
protein K08F8.3 protein.
Length = 433
Score = 28.3 bits (60), Expect = 5.3
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 288 LPSTNLYIILFIQETPSRQGVHWPQ 362
+P N Y++ F QE+P+ G+ P+
Sbjct: 165 VPKPNQYVVYFSQESPANSGIQIPR 189
>AJ745071-1|CAG32977.1| 433|Caenorhabditis elegans core
alpha1,3-fucosyltransferase protein.
Length = 433
Score = 28.3 bits (60), Expect = 5.3
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 288 LPSTNLYIILFIQETPSRQGVHWPQ 362
+P N Y++ F QE+P+ G+ P+
Sbjct: 165 VPKPNQYVVYFSQESPANSGIQIPR 189
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 28.3 bits (60), Expect = 5.3
Identities = 26/92 (28%), Positives = 28/92 (30%)
Frame = -2
Query: 659 GSREHXVHRGGGDEHPAQGAH*EARGRSHRRXGQPXRHHTRRLLDPAHTQERLRDSVDGL 480
G H H G G + G G H R G RH R R G
Sbjct: 251 GRHGHGGHGGHGSRSGSPGGRHGHGGSGHHRGG---RHGGHGRHGSCSGSPRGRHGHGGH 307
Query: 479 RRSSSRADLPGHGSHHCHGQVN*HREGHRSTH 384
SR+ P G H HG HR G H
Sbjct: 308 GGHGSRSGSP--GGRHGHGGSGHHRGGRHGGH 337
>U00035-6|AAA50647.1| 315|Caenorhabditis elegans Hypothetical
protein R01H2.5 protein.
Length = 315
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 242 LFRNFPQHVDFFR*SITIDESVYNLVHPGDTFAARSALA 358
LF N ++ FFR ++ I+++V L H D S L+
Sbjct: 70 LFHNLAHNLQFFRKNMAINDNVLALCHEFDVIKCVSCLS 108
>AM231686-1|CAJ77755.1| 315|Caenorhabditis elegans
GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4- reductase
protein.
Length = 315
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 242 LFRNFPQHVDFFR*SITIDESVYNLVHPGDTFAARSALA 358
LF N ++ FFR ++ I+++V L H D S L+
Sbjct: 70 LFHNLAHNLQFFRKNMAINDNVLALCHEFDVIKCVSCLS 108
>AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exterior
protein 2 protein.
Length = 1262
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
Frame = +3
Query: 318 FIQETPSRQGVHWP-----QDSCL*NMMSRAMAFTMSVDLSMTMMAAVPREVCAATRPSK 482
F++ + + WP D C N++ + + + +T A + EV RP
Sbjct: 318 FVRRSSHYEPSKWPLSDKESDRCHVNIVEKVQSIRSDHESYVTQFAKINNEVAICDRPGN 377
Query: 483 SINTVSQTFLGMSGVE 530
T L +SG++
Sbjct: 378 DSENREITSLALSGIQ 393
>AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector
protein.
Length = 1262
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
Frame = +3
Query: 318 FIQETPSRQGVHWP-----QDSCL*NMMSRAMAFTMSVDLSMTMMAAVPREVCAATRPSK 482
F++ + + WP D C N++ + + + +T A + EV RP
Sbjct: 318 FVRRSSHYEPSKWPLSDKESDRCHVNIVEKVQSIRSDHESYVTQFAKINNEVAICDRPGN 377
Query: 483 SINTVSQTFLGMSGVE 530
T L +SG++
Sbjct: 378 DSENREITSLALSGIQ 393
>Z78201-4|CAB01590.2| 911|Caenorhabditis elegans Hypothetical
protein ZK836.2 protein.
Length = 911
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 506 VLGYERGRGASWYDGXQVVPXAGDSARVPLNELLERDAHLL 628
+ G + GRG + +V + D +PLNEL+E + L
Sbjct: 581 ISGQDVGRGTFCHRHAMMVDQSTDHIHIPLNELVEEQKNQL 621
>Z78019-10|CAE46691.1| 911|Caenorhabditis elegans Hypothetical
protein ZK836.2 protein.
Length = 911
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 506 VLGYERGRGASWYDGXQVVPXAGDSARVPLNELLERDAHLL 628
+ G + GRG + +V + D +PLNEL+E + L
Sbjct: 581 ISGQDVGRGTFCHRHAMMVDQSTDHIHIPLNELVEEQKNQL 621
>Z74026-1|CAD56284.1| 1093|Caenorhabditis elegans Hypothetical protein
B0240.3 protein.
Length = 1093
Score = 27.5 bits (58), Expect = 9.2
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = -3
Query: 490 LMDFDG-LVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNK 314
+M DG L+AA T+L + + K I + + ++ + E MN+
Sbjct: 982 IMKKDGELLAAATALKPKDKMTLAKEKVIAERKNEEERLQRQQTLQEALEEHEEEIEMNE 1041
Query: 313 IIYRFVDGNASPKEIDMLWEISKQIE 236
++ +G PKE+D+ +S Q+E
Sbjct: 1042 VLVDEDEGEGKPKEVDLTSIVSTQME 1067
>Z19152-7|CAA79539.2| 643|Caenorhabditis elegans Hypothetical
protein B0464.6 protein.
Length = 643
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -3
Query: 430 VMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMN 317
V+ +S ++ +AIA+ I F KHE+ G G S +N
Sbjct: 600 VLRQSPNLFRAIAQFIHFVKHENHGYLDQTSIGPSGIN 637
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +3
Query: 189 CTGHAAPSPRAQIVCPSICFEISHSMSISFGE 284
CT H P + ++C C +I + SI F E
Sbjct: 6 CTHHLLPVSKLMVLCKFFCVDILNFTSIFFRE 37
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +3
Query: 189 CTGHAAPSPRAQIVCPSICFEISHSMSISFGE 284
CT H P + ++C C +I + SI F E
Sbjct: 6 CTHHLLPVSKLMVLCKFFCVDILNFTSIFFRE 37
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,026,830
Number of Sequences: 27780
Number of extensions: 326613
Number of successful extensions: 1174
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1153
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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