Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_J04
(679 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 77 3e-15
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 73 4e-14
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 68 1e-12
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 61 1e-10
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 50 2e-07
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |... 35 0.009
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 29 0.82
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po... 28 1.1
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|... 25 7.6
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 76.6 bits (180), Expect = 3e-15
Identities = 40/134 (29%), Positives = 72/134 (53%)
Frame = -3
Query: 674 SVISKXSDIHVLTGSLKLFFRELKEPLIPYSLFHRVLAACSIKPREAKIKEFREIIQALP 495
+V+ DI +T K + R L P+I Y + + A + + K+ F +I++LP
Sbjct: 803 TVLDPSEDISAVTSVFKQYLRNLPNPIITYDQYFPFITAANCASFQDKLDGFIMVIKSLP 862
Query: 494 QCNRDTLKFLLEHLLRVQQYSEKNRMHIANLAIVFGPTILWAPVTAKARNIAVDCIQQNN 315
+ + L+ ++ HL RV YS NRM NLA+VF PT++ P +R++ +D +N
Sbjct: 863 PAHAEILQLIIRHLARVAAYSHANRMTSKNLAVVFSPTLIRDP--DNSRDV-IDMTVKNY 919
Query: 314 VVDILLNEFNEIFS 273
+ L++ +E+F+
Sbjct: 920 SLAFLIDHVHEVFA 933
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 72.9 bits (171), Expect = 4e-14
Identities = 34/94 (36%), Positives = 56/94 (59%)
Frame = -3
Query: 656 SDIHVLTGSLKLFFRELKEPLIPYSLFHRVLAACSIKPREAKIKEFREIIQALPQCNRDT 477
+D+H + LK+FFREL+EPLIP + + A +++ + I LP N T
Sbjct: 573 NDVHAVADLLKIFFRELREPLIPDNHQRDFIDAGNVEDESRRRDAVHRAINDLPDANYST 632
Query: 476 LKFLLEHLLRVQQYSEKNRMHIANLAIVFGPTIL 375
++ L HL ++++ S+ N+M NLAI++GPTI+
Sbjct: 633 IRHLTIHLAKIKENSDVNKMSTNNLAIIWGPTII 666
>SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 68.1 bits (159), Expect = 1e-12
Identities = 33/94 (35%), Positives = 55/94 (58%)
Frame = -3
Query: 656 SDIHVLTGSLKLFFRELKEPLIPYSLFHRVLAACSIKPREAKIKEFREIIQALPQCNRDT 477
SD+ T LK + L EP+IP + + +L A I+ E KI+ E+++ L +
Sbjct: 843 SDLFACTSVLKTYLHRLPEPVIPGTQYEELLEAEKIEKEEEKIERVVEVMKTLHPAHLSV 902
Query: 476 LKFLLEHLLRVQQYSEKNRMHIANLAIVFGPTIL 375
+FL+ HL RV +++EKN M+ N++ VF PT++
Sbjct: 903 FRFLIAHLGRVCKHAEKNLMNSKNVSTVFAPTLM 936
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 61.3 bits (142), Expect = 1e-10
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Frame = -3
Query: 653 DIHVLTGSLKLFFRELKEPLIPYSLFHRVLAACSIKPRE-AKIKEFREIIQALPQCNRDT 477
D+HV+ G LKL+ R L L+ S+ H++ P + A + E ++I LP N
Sbjct: 1137 DVHVIAGLLKLYLRNLPTNLLDTSM-HKLFELLPNVPNDSAALGELCDVISKLPPENFAL 1195
Query: 476 LKFLLEHLLRVQQYSEKNRMHIANLAIVFGPTI 378
L LL HL R+ + + N+M+I N+ IVF PT+
Sbjct: 1196 LDSLLHHLRRIIAFEKVNKMNIRNVCIVFSPTL 1228
>SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1150
Score = 50.4 bits (115), Expect = 2e-07
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Frame = -3
Query: 641 LTGSLKLFFRELKEPLIPYSLFHRVLAACSIKPREAKIKEFREIIQALPQCNRDTLKFLL 462
L LK F REL +PL+ + LF + + ++ E +++ I LP+ +RDT++ +
Sbjct: 916 LAALLKKFLRELPDPLLTFKLFGLFITSSKLESEEERMRVLHLTICLLPKGHRDTMEVIF 975
Query: 461 EHLLRVQQYSE-----KNRMHIANLAIVFGPTILWA 369
L V +S ++M I NLA V P IL++
Sbjct: 976 GFLYWVASFSHIDDEVGSKMDIHNLATVITPNILYS 1011
>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 35.1 bits (77), Expect = 0.009
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = -3
Query: 644 VLTGSLKLFFRELKEPLIPYSLFHRVLAACSIKPREA--KIKEFREIIQALPQCNRDTLK 471
V+ G LKL+F EL + ++P S F + + + +++ + ++ L + N TL
Sbjct: 529 VVIGVLKLYFLELPDSIVPSSAFELIRSIYMNHSNDTPYRLRLLQNLLSQLRRVNLATLS 588
Query: 470 FLLEHLLRVQQYSEKNRMHIANLA 399
++ HL R+ + NLA
Sbjct: 589 AIITHLNRLITLTPNKETFTINLA 612
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 28.7 bits (61), Expect = 0.82
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -3
Query: 605 KEPLIPYSLFHRVLAACSIKPREAKIKEFREIIQALPQCNRDTLKFLLEHLL 450
K +P+ L H ++ A E ++ EI L + N+DTL +LE L
Sbjct: 2262 KPEKVPFRLTHNMVDAMGPTGYEGGFRKASEITMRLLRSNQDTLMSVLESFL 2313
>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 374
Score = 28.3 bits (60), Expect = 1.1
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = -3
Query: 518 REIIQALPQCNRDTLKFLLEHLL-RVQQYSEKNRMHIANLAIVFGPTILWAPVTAKARNI 342
+++I A N L L+ LL ++ Q+ ++N M+ NLA+ GP+ +KA NI
Sbjct: 270 QKLIDASMDKNSQKLARLIFSLLYQITQHEQENMMNAQNLALCIGPSF------SKADNI 323
Query: 341 A 339
A
Sbjct: 324 A 324
>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 997
Score = 25.4 bits (53), Expect = 7.6
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 40 PKFRYLNTSVLSLFD 84
P+FRY+N V+SL D
Sbjct: 674 PRFRYVNCEVISLMD 688
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,278,940
Number of Sequences: 5004
Number of extensions: 41075
Number of successful extensions: 132
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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