Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_J04
(679 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0413 + 17854787-17854847,17855362-17855606,17856127-178561... 53 2e-07
07_03_0032 - 12651989-12652636,12652726-12652956,12653515-126536... 46 2e-05
12_02_0615 + 21242819-21243201,21244510-21244630,21244728-212448... 44 1e-04
02_05_0309 + 27762613-27763070,27763940-27764060,27764168-277642... 40 0.001
11_01_0332 + 2483743-2484131,2486062-2486182,2486307-2486426,248... 39 0.003
12_01_0356 - 2707820-2708395,2708475-2708705,2709071-2709190,270... 38 0.010
04_04_0883 + 29079315-29079715,29080918-29081038,29081127-290812... 37 0.013
01_07_0307 + 42647006-42647202,42647287-42647866 34 0.12
07_03_1554 + 27659995-27660093,27661084-27661120,27661204-276612... 33 0.16
08_01_0759 - 7199085-7199414 30 2.0
07_03_0297 - 16383159-16383626 29 3.4
08_01_0755 - 7159471-7160124 29 4.5
05_04_0096 - 17931061-17931435,17931539-17931620,17932319-179324... 28 6.0
04_04_1237 - 31991817-31992569,31993452-31993550,31994343-319949... 28 7.9
>07_03_0413 +
17854787-17854847,17855362-17855606,17856127-17856189,
17856276-17856294,17856547-17856645,17856725-17856802,
17856891-17857135,17857796-17857952,17858161-17858303
Length = 369
Score = 53.2 bits (122), Expect = 2e-07
Identities = 28/86 (32%), Positives = 45/86 (52%)
Frame = -3
Query: 629 LKLFFRELKEPLIPYSLFHRVLAACSIKPREAKIKEFREIIQALPQCNRDTLKFLLEHLL 450
+K + + EPL +SL+ ++ I + R I++ LP N TL+F+ LL
Sbjct: 207 IKCYLASIPEPLTTFSLYDE------LRDARVSIADLRNILKKLPNVNYMTLEFVTALLL 260
Query: 449 RVQQYSEKNRMHIANLAIVFGPTILW 372
RV + S N+M +LA+ F P I+W
Sbjct: 261 RVSRKSSLNKMDSRSLAVEFAPLIMW 286
>07_03_0032 -
12651989-12652636,12652726-12652956,12653515-12653634,
12653768-12653891,12654023-12654366
Length = 488
Score = 46.4 bits (105), Expect = 2e-05
Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Frame = -3
Query: 653 DIHVLTGSLKLFFRELKEPLIPYSLFHRVLAACSIKPREAKIKEFREIIQALPQCNRDTL 474
D+H L +K +FREL E ++ SL + C+ + +E E+++ LP L
Sbjct: 187 DVHCLASLIKAWFRELPEGVLD-SLSPEQVLHCNTE------EECVELVRLLPPTQAALL 239
Query: 473 KFLLEHLLRVQQYSEKNRMHIANLAIVFGP--TILWAPVTAKARNIAV 336
+++E + V + E N+M+ N+A+VF P T + P+TA + V
Sbjct: 240 NWVVEFMADVVEEEESNKMNARNVAMVFAPNMTQMSDPLTALMHAVQV 287
>12_02_0615 +
21242819-21243201,21244510-21244630,21244728-21244847,
21245015-21245245,21245365-21245862
Length = 450
Score = 44.0 bits (99), Expect = 1e-04
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 2/114 (1%)
Frame = -3
Query: 671 VISKXSDIHVLTGSLKLFFRELKEPLIPYSLFHRVLAACSIKPREAKIKEFREIIQALPQ 492
V+ + D+H L +K +FREL E ++ SL + C+ + EF E++ L
Sbjct: 193 VVPEDIDVHCLASLIKAWFRELPEGVLD-SLSPEQVLQCNSEG------EFLELVTLLRP 245
Query: 491 CNRDTLKFLLEHLLRVQQYSEKNRMHIANLAIVFGP--TILWAPVTAKARNIAV 336
L + +E + V + E N+M+ N+A+VF P T + P+TA + V
Sbjct: 246 TQAALLNWAVELMADVVEEEELNKMNARNIAMVFAPNMTQMSDPLTALMHAVQV 299
>02_05_0309 +
27762613-27763070,27763940-27764060,27764168-27764287,
27764633-27764863,27764964-27765503
Length = 489
Score = 40.3 bits (90), Expect = 0.001
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
Frame = -3
Query: 671 VISKXSDIHVLTGSLKLFFRELKEPLIPYSLFHRVLAACSIKPREAKIKEFREIIQALPQ 492
V+ D+H LTG +K +FREL ++ SL + C+ + +E + LP
Sbjct: 218 VVPDGVDMHCLTGLIKAWFRELPSGVLD-SLTPEQVMHCNTE------EECALLASTLPP 270
Query: 491 CNRDTLKFLLEHLLRVQQYSEKNRMHIANLAIVFGP--TILWAPVTAKARNIAV 336
L + + + V ++ N+M+ N+A+VF P T + P+TA + V
Sbjct: 271 VEAALLDWAINLMADVVEHENYNKMNARNIAMVFAPNMTQMADPLTALIHAVQV 324
>11_01_0332 +
2483743-2484131,2486062-2486182,2486307-2486426,
2486897-2487127,2487205-2487783
Length = 479
Score = 39.1 bits (87), Expect = 0.003
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 2/109 (1%)
Frame = -3
Query: 677 TSVISKXSDIHVLTGSLKLFFRELKEPLIPYSLFHRVLAACSIKPREAKIKEFREIIQAL 498
+ ++ DIH L+G +K +FREL ++ S+ + C + ++ + + L
Sbjct: 193 SGIVPDGIDIHCLSGLIKAWFRELPSGVLD-SIPPEQVMQCQSE------EDCARVAKCL 245
Query: 497 PQCNRDTLKFLLEHLLRVQQYSEKNRMHIANLAIVFGP--TILWAPVTA 357
P L++ + + V Q + N+M+ N+A+VF P T + P+TA
Sbjct: 246 PPAEAALLEWAVNLMADVVQEEQINKMNARNIAMVFAPNMTQMSDPLTA 294
>12_01_0356 -
2707820-2708395,2708475-2708705,2709071-2709190,
2709281-2709401,2711588-2712027
Length = 495
Score = 37.5 bits (83), Expect = 0.010
Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Frame = -3
Query: 671 VISKXSDIHVLTGSLKLFFRELKEPLIPYSLFHRVLAACSIKPREAKIKEFREIIQALPQ 492
++ + D+H L G +K +FREL ++ S+ + C + ++ + + LP
Sbjct: 212 IVPEGIDVHCLAGLIKAWFRELPSGVLD-SIPPEQVMQCQSE------EDCARVAKCLPP 264
Query: 491 CNRDTLKFLLEHLLRVQQYSEKNRMHIANLAIVFGP--TILWAPVTA 357
L + + + V Q + N+M+ N+A+VF P T + P+TA
Sbjct: 265 TEAALLDWAVNLMADVVQEEQINKMNARNIAMVFAPNMTQMADPLTA 311
>04_04_0883 +
29079315-29079715,29080918-29081038,29081127-29081246,
29081646-29081876,29081951-29082517
Length = 479
Score = 37.1 bits (82), Expect = 0.013
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 2/116 (1%)
Frame = -3
Query: 677 TSVISKXSDIHVLTGSLKLFFRELKEPLIPYSLFHRVLAACSIKPREAKIKEFREIIQAL 498
+ V+ D+H L G +K +FREL ++ SL + C+ + ++ + L
Sbjct: 197 SGVVPDEVDLHCLAGLIKAWFRELPTGVLD-SLTPEQVMHCNTE------EDCALLASML 249
Query: 497 PQCNRDTLKFLLEHLLRVQQYSEKNRMHIANLAIVFGP--TILWAPVTAKARNIAV 336
P L + + + V ++ N+M+ N+A+VF P T + P+TA + V
Sbjct: 250 PPVEAALLDWAINLMADVVEHENYNKMNARNIAMVFAPNMTQMADPLTALIHAVQV 305
>01_07_0307 + 42647006-42647202,42647287-42647866
Length = 258
Score = 33.9 bits (74), Expect = 0.12
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Frame = -3
Query: 653 DIHVLTGSLKLFFRELKEPLIPYSLFHRVLAACSIKPREAKIKEFREIIQALPQCNRDTL 474
D+H L G +K +FREL P + + AA + + A + + LP L
Sbjct: 138 DVHCLAGLIKAWFREL-----PGGMLDSLPAAEVTRCQSA--DDCARLCARLPAAKAALL 190
Query: 473 KFLLEHLLRVQQYSEKNRMHIANLAIVFGPTILWA--PVTA 357
+ ++ + V + N+M N+A+VF P + A P TA
Sbjct: 191 DWAVQLMADVAREERSNKMGSRNVAMVFAPNMTHAMDPFTA 231
>07_03_1554 +
27659995-27660093,27661084-27661120,27661204-27661280,
27662272-27662342,27662512-27662590,27662726-27662828,
27662963-27663082,27663180-27663257,27663416-27663471,
27663588-27663657,27664179-27664266,27664503-27664800,
27664943-27665158,27665521-27665841,27666054-27666103,
27666493-27666553,27666633-27666716,27666926-27667039,
27667134-27667300,27667559-27667628,27668328-27668507,
27668619-27668807
Length = 875
Score = 33.5 bits (73), Expect = 0.16
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = -3
Query: 665 SKXSDIHVLTGSLKLFFRELKEPLIPYSLFHRVLAACSIKPREAKIKEFREII-QALPQC 489
++ D HV+ +K REL +P S +L A ++ +E++I R I + P+
Sbjct: 227 AQDEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAFRLESKESRINSMRAAISETFPEP 286
Query: 488 NRDTLKFL 465
NR L+ L
Sbjct: 287 NRRLLQSL 294
>08_01_0759 - 7199085-7199414
Length = 109
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -3
Query: 494 QCNRDTLKFLLEHLLRVQQYSEKNRMHIANLAIVFGPTILW 372
Q +RD F +HLL + E N++ +A +A T LW
Sbjct: 60 QADRDGSSFCYDHLLPYAAFFEGNQVKVAEVAATILSTNLW 100
>07_03_0297 - 16383159-16383626
Length = 155
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = -3
Query: 335 DCIQQNNVVDILLNEFNEIFSEEN 264
DC+ N VVD+LL EFN+ F+E N
Sbjct: 105 DCL--NPVVDLLLIEFNDRFTETN 126
>08_01_0755 - 7159471-7160124
Length = 217
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -3
Query: 494 QCNRDTLKFLLEHLLRVQQYSEKNRMHIANLAIVFGPTILWAPV 363
Q +RD F HLL + E N++ +A +A T LW V
Sbjct: 60 QADRDGSSFCYYHLLPYAAFFEGNQVKVAEVAATILSTNLWVYV 103
>05_04_0096 -
17931061-17931435,17931539-17931620,17932319-17932446,
17932523-17932621,17932739-17932894,17934120-17934194,
17934582-17934749,17934825-17934993,17936640-17936923
Length = 511
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 499 SACIISLNSLIFASLGFIEQAARTLWNNEYG 591
+AC I N I SLG + + RT+ N E+G
Sbjct: 261 NACYIERNDAIIKSLGRVTNSERTVVNVEWG 291
>04_04_1237 -
31991817-31992569,31993452-31993550,31994343-31994976,
31995329-31995585
Length = 580
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/61 (31%), Positives = 27/61 (44%)
Frame = -2
Query: 615 QGAEGAADTVLVVP*SSRRLLYKAKGSEDQRVQGNNTSAAAMQQGHAQILIRTFIKGTAV 436
QG +G A VV RRL+ + G +R + SAAA G + +R +G
Sbjct: 378 QGHQGVAAAAAVVRAVGRRLVVRRGGGGRRRRRRRRPSAAAAAAGEQEGKVRQGPRGVQE 437
Query: 435 Q 433
Q
Sbjct: 438 Q 438
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,762,241
Number of Sequences: 37544
Number of extensions: 238702
Number of successful extensions: 685
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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