Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_J03
         (634 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF348166-1|AAK37544.1| 1221|Caenorhabditis elegans Toll-like rec...    29   2.8  
AC006604-2|AAF39752.2| 1221|Caenorhabditis elegans Toll (drosoph...    29   2.8  
U58756-6|AAY44007.1|  286|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z99286-3|CAH60794.1|  320|Caenorhabditis elegans Hypothetical pr...    27   8.4  
U41022-2|AAA82339.2|  373|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>AF348166-1|AAK37544.1| 1221|Caenorhabditis elegans Toll-like
           receptor TOL-1 protein.
          Length = 1221

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 561 DVSAGSLTHLRNKTDPFVHPS*EH 632
           D S GS  HL ++ DP  HP  EH
Sbjct: 893 DCSGGSQQHLHHRRDPKAHPFWEH 916


>AC006604-2|AAF39752.2| 1221|Caenorhabditis elegans Toll
           (drosophila) family protein 1 protein.
          Length = 1221

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 561 DVSAGSLTHLRNKTDPFVHPS*EH 632
           D S GS  HL ++ DP  HP  EH
Sbjct: 893 DCSGGSQQHLHHRRDPKAHPFWEH 916


>U58756-6|AAY44007.1|  286|Caenorhabditis elegans Hypothetical
           protein F58F9.9 protein.
          Length = 286

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -1

Query: 631 CSYEGCTKGSVLFRKCVRLPADTSRLCHKCIRYLYGRNYL 512
           CSY+ C KG +        P  T+  C  C + LY R  L
Sbjct: 22  CSYDVCAKGGMWTEWATTKPCPTN--CGSCAKILYTRKCL 59


>Z99286-3|CAH60794.1|  320|Caenorhabditis elegans Hypothetical
           protein Y7A9C.9 protein.
          Length = 320

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +3

Query: 84  IDISTQYISLNKISYLKYYLSSKTLTVLISNVSFIFSVIY 203
           I IS Q IS N+   ++ Y+  +TLT+ +  +  I  VIY
Sbjct: 217 IMISAQKISSNQYCKVQNYIHWQTLTIFVCKLINIVVVIY 256


>U41022-2|AAA82339.2|  373|Caenorhabditis elegans Hypothetical
           protein K08B5.1 protein.
          Length = 373

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 126 YLKYYLSSKTLTVLISNVSFIFSVIYIIN 212
           Y  YY  S  LT+L     FIF++++IIN
Sbjct: 186 YQLYYFISMWLTLLNVLAFFIFTILWIIN 214


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,873,995
Number of Sequences: 27780
Number of extensions: 244523
Number of successful extensions: 575
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)