Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_I23
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po...    31   0.13 
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    27   2.8  
SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   4.9  
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz...    26   4.9  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    25   6.4  

>SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 399

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -1

Query: 417 QPGGVFHWELLKLRKLPVDCISHRSGSEHSSNLHGRNTHWGRKLNHARL 271
           Q G  +H + LK R L +  ++H SG+ HS +LHG      + +   R+
Sbjct: 280 QLGREYHEKALKYRSLAMRSLAH-SGTSHSLDLHGATVREAKTIVRERV 327


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 42  FSERQRQYAKCGTSAACVREHPSIILRTIH 131
           F+ R   Y++ G S  CVR   S +  T+H
Sbjct: 254 FANRGTSYSQYGLSIRCVRPDQSSLTNTLH 283


>SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -1

Query: 330 SSNLHGRNTHWGRKLNHARLQP-MCHS-RSHRAALTPRCCHLFYSDIC 193
           S N   R  H   + N+ RL+   C S + H  A+  R CH   S++C
Sbjct: 52  SENRGFRTCHVCHRKNNMRLKVGTCESCKKHTCAICIRQCHKCESNVC 99


>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = -1

Query: 405 VFHWEL---LKLRKLPVDCISHRSGSEHSSNLHGRNTHWGRKLNH 280
           VFH  +   L + + P D   + + +E  + L   + HWG+++ H
Sbjct: 88  VFHAHIPNFLSVEQTPYDPEQYAAEAEADAALLEHDAHWGQRIKH 132


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/46 (28%), Positives = 28/46 (60%)
 Frame = -2

Query: 371 CLWIALAIDPEASIVQIYMVATLIGAGSSITLVSSLCVTADLIGPH 234
           CL  +  ++ E +++  YM+ +++ + +SI+ +S + V  DL G H
Sbjct: 318 CLSSSRIVNSETNVMVPYMIYSILNSKNSISGLSVIDVLRDL-GSH 362


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,505,190
Number of Sequences: 5004
Number of extensions: 49127
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)