Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_I23
         (603 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0475 + 3656628-3656791,3656944-3657013,3657114-3657310,365...    51   6e-07
07_03_1019 + 23337543-23337697,23338315-23338384,23338555-233387...    43   2e-04
06_03_0822 + 25006380-25006544,25006616-25006747,25006886-250069...    38   0.008
10_01_0262 + 2752044-2752079,2752880-2753167,2753198-2753551           31   0.70 
01_01_0802 + 6246267-6247541,6247625-6247682,6247806-6248129,624...    30   1.6  
09_06_0371 + 22615809-22617431,22618312-22618422,22619361-226194...    29   2.8  
01_01_0944 + 7437536-7437652,7438468-7438704                           28   5.0  
08_02_0530 + 18244933-18245217,18245309-18245383,18246176-182462...    28   6.5  
07_01_0162 + 1138420-1138640,1138788-1138830,1139449-1140971,114...    27   8.7  

>03_01_0475 +
           3656628-3656791,3656944-3657013,3657114-3657310,
           3657409-3657484,3657794-3657877,3658247-3658326,
           3658422-3658548,3658727-3658786,3658874-3658924,
           3659013-3659171,3659296-3659428,3659545-3659717
          Length = 457

 Score = 51.2 bits (117), Expect = 6e-07
 Identities = 29/103 (28%), Positives = 61/103 (59%), Gaps = 4/103 (3%)
 Frame = -2

Query: 392 SCLSLGSCLWI----ALAIDPEASIVQIYMVATLIGAGSSITLVSSLCVTADLIGPHSHQ 225
           S L++G+ LW+    A+ + P      +Y +A +IGA +++ +V+++ + + L+G   + 
Sbjct: 314 SLLTIGAILWVIAGAAVFVLPSQMHNLMYPLAMVIGAANALVMVTTIGLESALVGDDLNG 373

Query: 224 GAAIYSIVTFADKLVTGIAVVAIQNYKCDDVVDCPQYYRGVLT 96
            A +Y  ++F DK+  GIA+  +++Y  +D + C +  RG+ T
Sbjct: 374 CAFVYGSLSFLDKMSCGIALFVLESY--EDSISCGE-TRGLYT 413


>07_03_1019 +
           23337543-23337697,23338315-23338384,23338555-23338740,
           23339006-23339080,23339161-23339240,23339357-23339483,
           23340608-23340667,23341926-23341976,23342048-23342206,
           23342528-23342660,23343097-23343166,23343516-23343570
          Length = 406

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 23/88 (26%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
 Frame = -2

Query: 383 SLGSCLWI----ALAIDPEASIVQIYMVATLIGAGSSITLVSSLCVTADLIGPHSHQGAA 216
           S G+ LWI     + + P      +Y ++  IG  +++  V+S+ +   L+G   +  A 
Sbjct: 282 SAGAMLWILSGVGIVVLPSGMHNFMYALSITIGVANALMTVTSISMEGILVGEDLNGCAF 341

Query: 215 IYSIVTFADKLVTGIAVVAIQNYKCDDV 132
           +Y  ++F DK+  G+A+  +++Y+ D V
Sbjct: 342 VYGSLSFVDKVSCGLALYILESYQDDTV 369


>06_03_0822 +
           25006380-25006544,25006616-25006747,25006886-25006922,
           25007050-25007093,25007878-25007988
          Length = 162

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 19/74 (25%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
 Frame = -2

Query: 392 SCLSLGSCLWI----ALAIDPEASIVQIYMVATLIGAGSSITLVSSLCVTADLIGPHSHQ 225
           S L++G+ LW+    A+ + P      IY +A +IGA +++ +++++ + + L+G   + 
Sbjct: 13  SLLTIGAILWVIAGAAVFVLPSQMHNLIYPLAVVIGAANTLVMLTTIGLESALVGDDLNG 72

Query: 224 GAAIYSIVTFADKL 183
              +Y  ++F DK+
Sbjct: 73  CTFVYGSLSFLDKI 86


>10_01_0262 + 2752044-2752079,2752880-2753167,2753198-2753551
          Length = 225

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = -2

Query: 338 ASIVQIYMVATLIGAGSSITLVSSLCVTADLIGPHSHQGAA 216
           A +VQI +      AGS  T  SS    A+L GP  HQG++
Sbjct: 2   APVVQINVHIQFDEAGSRTTATSSWVAAAELEGPGRHQGSS 42


>01_01_0802 +
           6246267-6247541,6247625-6247682,6247806-6248129,
           6248321-6248355
          Length = 563

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +2

Query: 446 VARKRTMKCKAQEVHSQLALILHSGSQINV 535
           + R++ M+ + Q VH Q+AL+LHS  + N+
Sbjct: 520 IYREKHMQIQTQIVHQQMALMLHSHPERNI 549


>09_06_0371 +
           22615809-22617431,22618312-22618422,22619361-22619453,
           22619562-22619661,22619754-22619834,22620774-22621047,
           22621254-22622069,22622921-22623029,22623509-22623602,
           22623881-22623939,22624150-22624197
          Length = 1135

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
 Frame = -2

Query: 368 LWIAL--AIDPEASIVQIYMVATLIGAGSSITLVSSLCVTADLIGPHSHQGAAIYSIVTF 195
           LW +L  A    A  VQ+  +   +     +TL++ L   A L   H+ + A  Y   T 
Sbjct: 169 LWNSLLHAYLSRAHYVQVLRLFRTMRTADHVTLLALLSACAHLGALHTARWAHAYLATTC 228

Query: 194 ADKLVTGIAVVAIQNY-KCDDV 132
           +  + T +A   +  Y +C DV
Sbjct: 229 SFPITTNLATALLNMYMRCGDV 250


>01_01_0944 + 7437536-7437652,7438468-7438704
          Length = 117

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = -1

Query: 369 PVDCISHRSGSEHSSNLHGRNTHWGRKLNHARLQPMCHSRSHRAALTPRCCHLFYSD 199
           PVD       S+H  + +    H   K  H   +P C+S+S    L P+  H +YS+
Sbjct: 35  PVDGKMRDKPSKHLLSQNRFGVHGELKFQHRNRRPDCYSQSPYLVLDPK-EHQYYSN 90


>08_02_0530 +
           18244933-18245217,18245309-18245383,18246176-18246292,
           18246503-18246631,18246726-18246785,18247271-18247441,
           18247596-18247689,18247860-18247951,18248071-18248220,
           18248407-18248465,18249735-18249864
          Length = 453

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 564 SCVRAIVLGGTFICEPEC 511
           SC R ++LG   IC P+C
Sbjct: 169 SCTRGVILGSEPICPPDC 186


>07_01_0162 + 1138420-1138640,1138788-1138830,1139449-1140971,
            1141770-1142063,1142145-1142337,1142624-1142694,
            1142781-1144200
          Length = 1254

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 258  HSRSHRAALTPRCCH 214
            HS +HRA   P CCH
Sbjct: 1074 HSETHRARPNPACCH 1088


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,039,998
Number of Sequences: 37544
Number of extensions: 348778
Number of successful extensions: 912
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)