Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_I23
(603 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC068439-1|AAH68439.1| 480|Homo sapiens chromosome 19 open read... 91 2e-18
BC036706-1|AAH36706.1| 471|Homo sapiens C19orf28 protein protein. 91 2e-18
AK022609-1|BAB14128.1| 307|Homo sapiens protein ( Homo sapiens ... 30 7.2
BX641095-1|CAE46045.1| 1374|Homo sapiens hypothetical protein pr... 29 9.5
AY788891-1|AAX14639.1| 1428|Homo sapiens CD109 protein. 29 9.5
AY149920-1|AAN78483.1| 1445|Homo sapiens activated T-cell marker... 29 9.5
AL834478-1|CAD39137.1| 854|Homo sapiens hypothetical protein pr... 29 9.5
AL591480-1|CAI15122.1| 1445|Homo sapiens RP11-525G3.1 protein. 29 9.5
AL590428-2|CAI15636.1| 1445|Homo sapiens RP11-525G3.1 protein. 29 9.5
AF410459-1|AAL84159.1| 1445|Homo sapiens CD109 protein. 29 9.5
>BC068439-1|AAH68439.1| 480|Homo sapiens chromosome 19 open reading
frame 28 protein.
Length = 480
Score = 91.5 bits (217), Expect = 2e-18
Identities = 54/161 (33%), Positives = 83/161 (51%), Gaps = 1/161 (0%)
Frame = -2
Query: 602 LLYVFXRLYWALSLVYVPLFLEERLSVNPSAGSELVASVPXXXXXXXXXXXXXXXXXXXX 423
+LY+ RL LS Y+ ++L L + + +A++P
Sbjct: 282 ILYMTTRLIVNLSQTYMAMYLTYSLHLP----KKFIATIPLVMYLSGFLSSFLMKPINKC 337
Query: 422 FGNQVVYFIGSCLSLGSCLWIALAIDPEASIVQIYMVATLIGAGSSITLVSSLCVTADLI 243
G + YF G + L W+ALA E V +Y A L+GAG + LV+SL +TADLI
Sbjct: 338 IGRNMTYFSGLLVILAFAAWVALA---EGLGVAVYAAAVLLGAGCATILVTSLAMTADLI 394
Query: 242 GPHSHQGAAIYSIVTFADKLVTGIAVVAIQN-YKCDDVVDC 123
GPH++ GA +Y ++F DK+ G+AV+AIQ+ + C + C
Sbjct: 395 GPHTNSGAFVYGSMSFLDKVANGLAVMAIQSLHPCPSELCC 435
>BC036706-1|AAH36706.1| 471|Homo sapiens C19orf28 protein protein.
Length = 471
Score = 91.5 bits (217), Expect = 2e-18
Identities = 54/161 (33%), Positives = 83/161 (51%), Gaps = 1/161 (0%)
Frame = -2
Query: 602 LLYVFXRLYWALSLVYVPLFLEERLSVNPSAGSELVASVPXXXXXXXXXXXXXXXXXXXX 423
+LY+ RL LS Y+ ++L L + + +A++P
Sbjct: 273 ILYMTTRLIVNLSQTYMAMYLTYSLHLP----KKFIATIPLVMYLSGFLSSFLMKPINKC 328
Query: 422 FGNQVVYFIGSCLSLGSCLWIALAIDPEASIVQIYMVATLIGAGSSITLVSSLCVTADLI 243
G + YF G + L W+ALA E V +Y A L+GAG + LV+SL +TADLI
Sbjct: 329 IGRNMTYFSGLLVILAFAAWVALA---EGLGVAVYAAAVLLGAGCATILVTSLAMTADLI 385
Query: 242 GPHSHQGAAIYSIVTFADKLVTGIAVVAIQN-YKCDDVVDC 123
GPH++ GA +Y ++F DK+ G+AV+AIQ+ + C + C
Sbjct: 386 GPHTNSGAFVYGSMSFLDKVANGLAVMAIQSLHPCPSELCC 426
>AK022609-1|BAB14128.1| 307|Homo sapiens protein ( Homo sapiens
cDNA FLJ12547 fis, clone NT2RM4000634. ).
Length = 307
Score = 29.9 bits (64), Expect = 7.2
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = -1
Query: 597 ICIXSSVLGIESCVRAIVLGGTFICEPECRIRASCECTSCALHFIV 460
+C+ V G+ CV A V G TF+C C C C C H V
Sbjct: 88 LCVRLCV-GVHICVCACVCGCTFVC--VCACVCGCLCV-CGAHLCV 129
>BX641095-1|CAE46045.1| 1374|Homo sapiens hypothetical protein
protein.
Length = 1374
Score = 29.5 bits (63), Expect = 9.5
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -1
Query: 474 LHFIVLFLATTQEQD*QFWQPGGVFHWELLKLRKLPV 364
LH +L Q+ + +FW PG V H EL K PV
Sbjct: 939 LHRTYTWLKGHQKSNGEFWDPGRVIHSELQGGNKSPV 975
>AY788891-1|AAX14639.1| 1428|Homo sapiens CD109 protein.
Length = 1428
Score = 29.5 bits (63), Expect = 9.5
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -1
Query: 474 LHFIVLFLATTQEQD*QFWQPGGVFHWELLKLRKLPV 364
LH +L Q+ + +FW PG V H EL K PV
Sbjct: 1010 LHRTYTWLKGHQKSNGEFWDPGRVIHSELQGGNKSPV 1046
>AY149920-1|AAN78483.1| 1445|Homo sapiens activated T-cell marker
CD109 protein.
Length = 1445
Score = 29.5 bits (63), Expect = 9.5
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -1
Query: 474 LHFIVLFLATTQEQD*QFWQPGGVFHWELLKLRKLPV 364
LH +L Q+ + +FW PG V H EL K PV
Sbjct: 1010 LHRTYTWLKGHQKSNGEFWDPGRVIHSELQGGNKSPV 1046
>AL834478-1|CAD39137.1| 854|Homo sapiens hypothetical protein
protein.
Length = 854
Score = 29.5 bits (63), Expect = 9.5
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -1
Query: 474 LHFIVLFLATTQEQD*QFWQPGGVFHWELLKLRKLPV 364
LH +L Q+ + +FW PG V H EL K PV
Sbjct: 419 LHRTYTWLKGHQKSNGEFWDPGRVIHSELQGGNKSPV 455
>AL591480-1|CAI15122.1| 1445|Homo sapiens RP11-525G3.1 protein.
Length = 1445
Score = 29.5 bits (63), Expect = 9.5
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -1
Query: 474 LHFIVLFLATTQEQD*QFWQPGGVFHWELLKLRKLPV 364
LH +L Q+ + +FW PG V H EL K PV
Sbjct: 1010 LHRTYTWLKGHQKSNGEFWDPGRVIHSELQGGNKSPV 1046
>AL590428-2|CAI15636.1| 1445|Homo sapiens RP11-525G3.1 protein.
Length = 1445
Score = 29.5 bits (63), Expect = 9.5
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -1
Query: 474 LHFIVLFLATTQEQD*QFWQPGGVFHWELLKLRKLPV 364
LH +L Q+ + +FW PG V H EL K PV
Sbjct: 1010 LHRTYTWLKGHQKSNGEFWDPGRVIHSELQGGNKSPV 1046
>AF410459-1|AAL84159.1| 1445|Homo sapiens CD109 protein.
Length = 1445
Score = 29.5 bits (63), Expect = 9.5
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -1
Query: 474 LHFIVLFLATTQEQD*QFWQPGGVFHWELLKLRKLPV 364
LH +L Q+ + +FW PG V H EL K PV
Sbjct: 1010 LHRTYTWLKGHQKSNGEFWDPGRVIHSELQGGNKSPV 1046
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,653,100
Number of Sequences: 237096
Number of extensions: 1946016
Number of successful extensions: 3645
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3643
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6354183230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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