Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_I23
(603 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U55376-5|AAA98007.1| 501|Caenorhabditis elegans Hypothetical pr... 58 5e-09
AF039052-7|AAO91672.2| 462|Caenorhabditis elegans Hypothetical ... 30 1.1
AF039052-6|AAF98635.2| 534|Caenorhabditis elegans Hypothetical ... 30 1.1
U13876-11|AAN63395.1| 201|Caenorhabditis elegans Coenzyme q (ub... 29 2.6
U13876-10|AAN63394.1| 216|Caenorhabditis elegans Coenzyme q (ub... 29 2.6
U13876-9|AAW88395.1| 356|Caenorhabditis elegans Coenzyme q (ubi... 29 2.6
U13876-8|AAN63396.1| 370|Caenorhabditis elegans Coenzyme q (ubi... 29 2.6
U13876-7|AAW88396.1| 427|Caenorhabditis elegans Coenzyme q (ubi... 29 2.6
AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore ... 29 2.6
>U55376-5|AAA98007.1| 501|Caenorhabditis elegans Hypothetical
protein F16H11.1 protein.
Length = 501
Score = 58.0 bits (134), Expect = 5e-09
Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 1/151 (0%)
Frame = -2
Query: 602 LLYVFXRLYWALSLVYVPLFLEERLSVNPSAGSELVASVPXXXXXXXXXXXXXXXXXXXX 423
LLY+ RLY +S VY P ++ ++ + + VA +P
Sbjct: 286 LLYMLSRLYINISQVYFPFYI----TMTQNYEKKYVAILPMVAYLSSFSVSMVNSLPVVS 341
Query: 422 F-GNQVVYFIGSCLSLGSCLWIALAIDPEASIVQIYMVATLIGAGSSITLVSSLCVTADL 246
+++Y G + SC + L + +IY +A IG +I L++SL +TADL
Sbjct: 342 KLSKKILYSFGLASGMLSCAVMMLDLPGW----KIYALAVGIGIAQAILLITSLSITADL 397
Query: 245 IGPHSHQGAAIYSIVTFADKLVTGIAVVAIQ 153
I ++ GA +Y ++F DKL GIA I+
Sbjct: 398 INKNTESGAFVYGAMSFFDKLSNGIAYQLIE 428
>AF039052-7|AAO91672.2| 462|Caenorhabditis elegans Hypothetical
protein T22D1.3b protein.
Length = 462
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -2
Query: 269 SLCVTADLIGPHSHQGAAIYSIVTFADKLVTGIAVVA 159
S+C+T D++ QG A+Y + +A++ GI +VA
Sbjct: 347 SICITQDVMAVGRAQGTAVYDVARYANQ--RGIPIVA 381
>AF039052-6|AAF98635.2| 534|Caenorhabditis elegans Hypothetical
protein T22D1.3a protein.
Length = 534
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -2
Query: 269 SLCVTADLIGPHSHQGAAIYSIVTFADKLVTGIAVVA 159
S+C+T D++ QG A+Y + +A++ GI +VA
Sbjct: 347 SICITQDVMAVGRAQGTAVYDVARYANQ--RGIPIVA 381
>U13876-11|AAN63395.1| 201|Caenorhabditis elegans Coenzyme q
(ubiquinone) biosynthesisprotein 2, isoform d protein.
Length = 201
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = -2
Query: 398 IGSCLSLGSCLWIALAIDPEASIVQIYMVATLIGAGSSITLVSSLCVTADL 246
IG+ L C W P + IYM+ +L GAG+ + + S+ CV DL
Sbjct: 75 IGTWLLYWPCTWSIAMATPAGQLPSIYML-SLFGAGAFL-MRSAGCVINDL 123
>U13876-10|AAN63394.1| 216|Caenorhabditis elegans Coenzyme q
(ubiquinone) biosynthesisprotein 2, isoform c protein.
Length = 216
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = -2
Query: 398 IGSCLSLGSCLWIALAIDPEASIVQIYMVATLIGAGSSITLVSSLCVTADL 246
IG+ L C W P + IYM+ +L GAG+ + + S+ CV DL
Sbjct: 75 IGTWLLYWPCTWSIAMATPAGQLPSIYML-SLFGAGAFL-MRSAGCVINDL 123
>U13876-9|AAW88395.1| 356|Caenorhabditis elegans Coenzyme q
(ubiquinone) biosynthesisprotein 2, isoform a protein.
Length = 356
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = -2
Query: 398 IGSCLSLGSCLWIALAIDPEASIVQIYMVATLIGAGSSITLVSSLCVTADL 246
IG+ L C W P + IYM+ +L GAG+ + + S+ CV DL
Sbjct: 75 IGTWLLYWPCTWSIAMATPAGQLPSIYML-SLFGAGAFL-MRSAGCVINDL 123
>U13876-8|AAN63396.1| 370|Caenorhabditis elegans Coenzyme q
(ubiquinone) biosynthesisprotein 2, isoform e protein.
Length = 370
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = -2
Query: 398 IGSCLSLGSCLWIALAIDPEASIVQIYMVATLIGAGSSITLVSSLCVTADL 246
IG+ L C W P + IYM+ +L GAG+ + + S+ CV DL
Sbjct: 75 IGTWLLYWPCTWSIAMATPAGQLPSIYML-SLFGAGAFL-MRSAGCVINDL 123
>U13876-7|AAW88396.1| 427|Caenorhabditis elegans Coenzyme q
(ubiquinone) biosynthesisprotein 2, isoform b protein.
Length = 427
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = -2
Query: 398 IGSCLSLGSCLWIALAIDPEASIVQIYMVATLIGAGSSITLVSSLCVTADL 246
IG+ L C W P + IYM+ +L GAG+ + + S+ CV DL
Sbjct: 75 IGTWLLYWPCTWSIAMATPAGQLPSIYML-SLFGAGAFL-MRSAGCVINDL 123
>AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore
complex protein protein8, isoform b protein.
Length = 1090
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -1
Query: 318 HGRNTHWGRKLNHARLQPMCHSRSHRAALTPRCCHLFYSDICRQTC 181
HGR+ L + + C+S + LT RC +L ++ +C Q+C
Sbjct: 831 HGRSGSDAEMLGAEKKREDCYS--WKMGLTQRCAYLSHAILCAQSC 874
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,325,029
Number of Sequences: 27780
Number of extensions: 300133
Number of successful extensions: 816
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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