Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_I23
         (603 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   1.7  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   1.7  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   4.0  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    21   9.3  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -3

Query: 136 MLWIVLNIIEGCS 98
           ++WIVL +I GCS
Sbjct: 8   IMWIVLVLISGCS 20


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 109 EGCSRTHAAEVPHLAY 62
           E C R H++ +P L+Y
Sbjct: 54  EPCQRVHSSRIPDLSY 69


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/40 (22%), Positives = 21/40 (52%)
 Frame = -2

Query: 419 GNQVVYFIGSCLSLGSCLWIALAIDPEASIVQIYMVATLI 300
           GN ++   G C+ L    W++  ++ EA+  ++ +  T +
Sbjct: 214 GNFLIQVYGPCVLLVVLSWVSFWLNREATADRVSLGITTV 253


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = +1

Query: 535 SSKNNGTYTRLNAQYRRXNTYNK 603
           S  NN  Y+  N      N YNK
Sbjct: 84  SLSNNYNYSNYNNYNNNYNNYNK 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,822
Number of Sequences: 438
Number of extensions: 3675
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)