Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_I21
(775 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 43 4e-05
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 37 0.004
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 33 0.060
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 32 0.079
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 32 0.10
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 32 0.10
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 31 0.14
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 31 0.18
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 30 0.32
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 29 0.56
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 29 0.74
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce... 29 0.74
SPBC13G1.03c |pex14||peroxisomal membrane anchor protein|Schizos... 29 0.98
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 29 0.98
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 29 0.98
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 28 1.3
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy... 28 1.3
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 1.7
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 28 1.7
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 28 1.7
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 2.3
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr... 27 2.3
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 3.0
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 27 3.9
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc... 27 3.9
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 26 5.2
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom... 26 6.9
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr... 25 9.1
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 43.2 bits (97), Expect = 4e-05
Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 10/147 (6%)
Frame = -2
Query: 603 ERMDALENQLKEARFLAEEADKKYDEVARKLAMVEADLXXXXXXXXXXXSKIVELEEE-- 430
E+++A + EA AE A+ K EV +L++ E + S++ ELEEE
Sbjct: 6 EKINAARAETDEAVARAEAAEAKLKEVELQLSLKEQEYESLSRKSEAAESQLEELEEETK 65
Query: 429 -LRVVGNNLKSLEVSEEKANQR----EEEYKNQIKTL---TTRLKXXXXXXXXXXRSVQK 274
LR+ +N + E+ +++ EEE + K L T +++ R VQ
Sbjct: 66 QLRLKADNEDIQKTEAEQLSRKVELLEEELETNDKLLRETTEKMRQTDVKAEHFERRVQS 125
Query: 273 LQKEVDRLEDELVAEKEKYKDIGDDLD 193
L++E D +E +L +KY + +LD
Sbjct: 126 LERERDDMEQKLEEMTDKYTKVKAELD 152
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 36.7 bits (81), Expect = 0.004
Identities = 20/83 (24%), Positives = 40/83 (48%)
Frame = -2
Query: 441 LEEELRVVGNNLKSLEVSEEKANQREEEYKNQIKTLTTRLKXXXXXXXXXXRSVQKLQKE 262
LE+E + + LKSLE ++ + EE ++ LT +LK + + Q+E
Sbjct: 897 LEQESAQLNSGLKSLEAEKQLLHTENEELHIRLDKLTGKLKIEESKSSDLGKKLTARQEE 956
Query: 261 VDRLEDELVAEKEKYKDIGDDLD 193
+ L++E +++ + + LD
Sbjct: 957 ISNLKEENMSQSQAITSVKSKLD 979
Score = 27.1 bits (57), Expect = 3.0
Identities = 29/148 (19%), Positives = 62/148 (41%), Gaps = 2/148 (1%)
Frame = -2
Query: 696 TATAKLSEASQAADESERARKVLENRSLADEERMDALENQLKEARFLAEEADKKYDEVAR 517
T ++L++A E+ K L+ + + + + +K+ EEA
Sbjct: 382 TIHSQLTDAESKLSSFEQENKSLKGSIDEYQNNLSSKDKMVKQVSSQLEEARSSLAHATG 441
Query: 516 KLAMVEADLXXXXXXXXXXXSKIVELEEELRVVGNNLKSLEVSEEKA--NQREEEYKNQI 343
KLA + ++ ++E++LR N+ S E+ E+ A +++++E N
Sbjct: 442 KLAEINSE----RDFQNKKIKDFEKIEQDLRACLNS-SSNELKEKSALIDKKDQELNN-- 494
Query: 342 KTLTTRLKXXXXXXXXXXRSVQKLQKEV 259
L ++K S+Q LQ+++
Sbjct: 495 --LREQIKEQKKVSESTQSSLQSLQRDI 520
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 32.7 bits (71), Expect = 0.060
Identities = 26/121 (21%), Positives = 56/121 (46%), Gaps = 1/121 (0%)
Frame = -2
Query: 684 KLSEASQAADESERARKVLENRSLADEE-RMDALENQLKEARFLAEEADKKYDEVARKLA 508
KL + + A S+ ++E S R++ L N+L+ + ++ +KK++E L
Sbjct: 642 KLLDMAPATPNSKLNTNLIEQTSYQRSLIRLEQLTNELESLKSISRNKEKKFEEAISSLQ 701
Query: 507 MVEADLXXXXXXXXXXXSKIVELEEELRVVGNNLKSLEVSEEKANQREEEYKNQIKTLTT 328
+ ++++ S +E +L KSL +SE ++ +E YK+ + L +
Sbjct: 702 LEKSNIQLQLTSLTSERSLALEKLNDLE------KSLVLSERSKDELDESYKSLQEQLAS 755
Query: 327 R 325
+
Sbjct: 756 K 756
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 32.3 bits (70), Expect = 0.079
Identities = 19/82 (23%), Positives = 38/82 (46%)
Frame = -2
Query: 435 EELRVVGNNLKSLEVSEEKANQREEEYKNQIKTLTTRLKXXXXXXXXXXRSVQKLQKEVD 256
+ELR + NL+ + +++ + E + +L RLK ++ Q+ +
Sbjct: 713 KELRSINQNLQDIISRQDQRASKFAEELLHVNSLAERLKGELNASKGEKDLRKRTQERLI 772
Query: 255 RLEDELVAEKEKYKDIGDDLDT 190
D+L+AE+E+ + DL T
Sbjct: 773 SENDKLLAERERLMSLVSDLQT 794
Score = 28.7 bits (61), Expect = 0.98
Identities = 19/79 (24%), Positives = 38/79 (48%)
Frame = -2
Query: 444 ELEEELRVVGNNLKSLEVSEEKANQREEEYKNQIKTLTTRLKXXXXXXXXXXRSVQKLQK 265
+L+E + N+L SL+ S EK+ EY ++IKTL + + Q ++
Sbjct: 823 KLKESNEKMSNDLHSLQKSLEKSGI---EYSSRIKTLMLEKQSLSEDNRKLLDNQQMMEI 879
Query: 264 EVDRLEDELVAEKEKYKDI 208
++ L + EK+++ +
Sbjct: 880 KLQELNGVIELEKQRFSTL 898
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 31.9 bits (69), Expect = 0.10
Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 7/129 (5%)
Frame = -2
Query: 606 EERMDALENQLKEARFLAEEADKKYDEVARKLAMVEADLXXXXXXXXXXXS-------KI 448
E+ + +++L E + E+++ Y+ V + +E +L S +I
Sbjct: 796 EKEFNQYKHKLDEFTPILEKSENDYNGVKLECEQLEGELQNHQQSLVQGESTTSLIKTEI 855
Query: 447 VELEEELRVVGNNLKSLEVSEEKANQREEEYKNQIKTLTTRLKXXXXXXXXXXRSVQKLQ 268
ELE L +N K L E + + +I +L+T +K ++QKL
Sbjct: 856 AELELSLVNEEHNRKKLTELIEIESAKFSGLNKEIDSLSTSMKTFESEINNGELTIQKLN 915
Query: 267 KEVDRLEDE 241
E DRLE E
Sbjct: 916 HEFDRLERE 924
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 31.9 bits (69), Expect = 0.10
Identities = 35/161 (21%), Positives = 66/161 (40%), Gaps = 3/161 (1%)
Frame = -2
Query: 690 TAKLSEASQAADESERARKVLENRSLADEERMDALENQLKEARFLAEEADKKYDEVARKL 511
T L E A E + + +R ER+ +LENQ+ AD+KY+ + +
Sbjct: 873 TNDLQEEQALAHEKDILVERANSRVEVVHERLSSLENQV-------TIADEKYEFLYAEK 925
Query: 510 AMVEADLXXXXXXXXXXXSKIVELEEELRVVGNNLKSLEVSEEKANQREEEYKN---QIK 340
+E DL LE++L + K + K + E++Y N +
Sbjct: 926 QSIEEDLANKQTEISYLSDLSSTLEKKLSSI---KKDEQTISSKYKELEKDYLNIMADYQ 982
Query: 339 TLTTRLKXXXXXXXXXXRSVQKLQKEVDRLEDELVAEKEKY 217
+ L ++++L +++ RL+DEL+ ++ Y
Sbjct: 983 HSSQHLSNLEKAINEKNLNIRELNEKLMRLDDELLLKQRSY 1023
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 31.5 bits (68), Expect = 0.14
Identities = 24/127 (18%), Positives = 54/127 (42%), Gaps = 1/127 (0%)
Frame = -2
Query: 615 LADEERMDALENQLKEARFLAEEADKKYDE-VARKLAMVEADLXXXXXXXXXXXSKIVEL 439
L ++ L+ Q + ++F + K+ DE + +L + ++ ++ E+
Sbjct: 367 LLKNQKQSLLDKQSRTSQFTTK---KERDEWIRNQLLQINRNINSTKENSDYLKTEYDEM 423
Query: 438 EEELRVVGNNLKSLEVSEEKANQREEEYKNQIKTLTTRLKXXXXXXXXXXRSVQKLQKEV 259
E EL+ + K +E+S E R + I ++ R + R KL+ +
Sbjct: 424 ENELKAKLSRKKEIEISLESQGDRMSQLLANITSINERKENLTDKRKSLWREEAKLKSSI 483
Query: 258 DRLEDEL 238
+ ++D+L
Sbjct: 484 ENVKDDL 490
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 31.1 bits (67), Expect = 0.18
Identities = 26/149 (17%), Positives = 61/149 (40%), Gaps = 5/149 (3%)
Frame = -2
Query: 624 NRSLADEERMDALENQLKEARFLAEEADKKYDEVARKLAMVEADLXXXXXXXXXXXSKIV 445
N + E + L + + +R +E + + ++L +E D + V
Sbjct: 475 NAIVEAESSKNELWDSMMVSRMKTQEQSIELTRLYKQLQDIEEDYENKLMRMEQQWREDV 534
Query: 444 E-LEEELRVVGNNLKSLEVSEEKANQREEEYKNQIKTLTTR----LKXXXXXXXXXXRSV 280
+ L+E + + L+ + K+++ ++Y+ + L T ++ S+
Sbjct: 535 DQLQEYVEEITQELQDTKEVLSKSSKESDDYEEVVGKLRTEAEREIEKFEKTIRENEESI 594
Query: 279 QKLQKEVDRLEDELVAEKEKYKDIGDDLD 193
++EV++L DE+ E+Y D + D
Sbjct: 595 SLFKEEVEKLTDEITQLSERYNDKCHEFD 623
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 30.3 bits (65), Expect = 0.32
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = -3
Query: 371 NAKRSTKIRSKPSPPV*RRLKHVPSS-PSVPCRNCKRRSIGLKTNLSPKRRNTRTSETIW 195
NAK + R SP L +PSS PS +N + I + S + N R++E ++
Sbjct: 186 NAKNYEENREPMSPSPQEALPLMPSSPPSQDYQNDQNHLILYTNSESIPKLNLRSNELVY 245
Query: 194 IPPS*SSFSRNKLPLYKDPKSE 129
PPS + L L KD + E
Sbjct: 246 PPPS-KDLLQKLLALEKDGQVE 266
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 29.5 bits (63), Expect = 0.56
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Frame = +3
Query: 474 APRRAPS---QPQPWPAYEQPHRISCRPPQRGTWLPSADFRGRPCAPHPPTTCSRAPYVR 644
AP+ AP+ P P ++QP + S P +A F AP PPTT +
Sbjct: 446 APQSAPALSMNPSSLPPWQQPTQQSAVQPSNLVPSQNAPFIPGTSAPLPPTTFAPPGVPL 505
Query: 645 ARIHRRPGWP 674
I PG P
Sbjct: 506 PPIPGAPGMP 515
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 29.1 bits (62), Expect = 0.74
Identities = 28/139 (20%), Positives = 60/139 (43%)
Frame = -2
Query: 558 LAEEADKKYDEVARKLAMVEADLXXXXXXXXXXXSKIVELEEELRVVGNNLKSLEVSEEK 379
+ +E D+ +E+ +++ E ++ +K+ + EE V N + + +
Sbjct: 539 ITKEKDRLINELEQRIKSYEVNVSELNGTIDEYRNKLKDKEETYNEVMNAFQYKDNDLRR 598
Query: 378 ANQREEEYKNQIKTLTTRLKXXXXXXXXXXRSVQKLQKEVDRLEDELVAEKEKYKDIGDD 199
++ + +++ K LT+ L+ + L++ V LE E + K+ D
Sbjct: 599 FHESINKLQDREKELTSNLEKKNLV-------ISSLRETVAMLEKERESIKKYLSGNAKD 651
Query: 198 LDTAFVELILKE*ASVIQR 142
LD + IL + SV+QR
Sbjct: 652 LDNTNLMEILNDKISVLQR 670
>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 29.1 bits (62), Expect = 0.74
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 248 KTNLSPKRR-NTRTSETIWIPPS*SSFSRNKLPLYKDP 138
K NL PKR NTR S + IPP +S S P + P
Sbjct: 6 KLNLPPKRTINTRLSTPVHIPPPINSESTRITPQHGSP 43
>SPBC13G1.03c |pex14||peroxisomal membrane anchor
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 286
Score = 28.7 bits (61), Expect = 0.98
Identities = 25/119 (21%), Positives = 50/119 (42%), Gaps = 5/119 (4%)
Frame = -2
Query: 588 LENQLKEARFLAEEADKKYDEVARKLAMVEADLXXXXXXXXXXXSKIVELEEELRVVG-- 415
LEN ++ R L+E +K+ DE+ L +E L +I + +++ +
Sbjct: 124 LENLDEQTRKLSERTEKQQDELDIALDDLEETLNTLKRTSENRDREIARISQDVYTMSTI 183
Query: 414 ---NNLKSLEVSEEKANQREEEYKNQIKTLTTRLKXXXXXXXXXXRSVQKLQKEVDRLE 247
+L+ ++ S+E+A Q + ++ L T K S+ L+ +D E
Sbjct: 184 TLPQSLEQIKKSQEEALQNLSREISSLRCLQTDSKKDDTFATTSNSSIPVLENPLDTSE 242
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 28.7 bits (61), Expect = 0.98
Identities = 19/77 (24%), Positives = 39/77 (50%)
Frame = -2
Query: 444 ELEEELRVVGNNLKSLEVSEEKANQREEEYKNQIKTLTTRLKXXXXXXXXXXRSVQKLQK 265
E +L V+ N+KS + ++ +E+K +++ L +L ++ ++
Sbjct: 483 EQARKLEVLDLNVKSSREQLQYVSKSNQEHKKEVEALQLQL-------VNSSTELESVKS 535
Query: 264 EVDRLEDELVAEKEKYK 214
E ++L++ELV E EK K
Sbjct: 536 ENEKLKNELVLEIEKRK 552
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 28.7 bits (61), Expect = 0.98
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 302 PSSPSVPCRNCKRRSIGLKTNLSPKR 225
P+SP+VP + S+ TN+SP+R
Sbjct: 138 PNSPTVPSKFSLNPSVATSTNISPRR 163
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = -3
Query: 194 IPPS*SSFSRNKLPLYKDPKS--EXPWQHHQ 108
+PPS + S N+ L P+ E PWQHHQ
Sbjct: 313 LPPS-NYLSPNRAELESTPEQLLEVPWQHHQ 342
>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 667
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Frame = +3
Query: 270 AVSAR--NARRTRHVLQPPSDGW 332
+V+AR N RR RHVL P +GW
Sbjct: 211 SVNARHDNLRRKRHVLVQPQEGW 233
>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 345
Score = 27.9 bits (59), Expect = 1.7
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -2
Query: 453 KIVELEEELRVVGNNLKSLEVSEEKANQREEEYKNQIKTL 334
+I +L EE + + ++ LE E+AN E+Y+ Q + L
Sbjct: 147 QITDLLEEQQQLKLEIERLEAETERANSETEQYEKQKEAL 186
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 27.9 bits (59), Expect = 1.7
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 6/56 (10%)
Frame = -2
Query: 648 ERARKVLENRSLADEERMDALENQLKEARFLAEE----ADK--KYDEVARKLAMVE 499
E +RK +E + LEN++KEAR + EE A+K YDE+ R+L++++
Sbjct: 303 EASRKEMETHCAT----IQTLENEVKEARKVKEESLTLANKFSDYDEIKRELSVLK 354
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 27.9 bits (59), Expect = 1.7
Identities = 17/58 (29%), Positives = 23/58 (39%)
Frame = +3
Query: 378 PSPLRLPEISGCYQRHGAPPQAQRFWIRRTRHAPRRAPSQPQPWPAYEQPHRISCRPP 551
PSP+ LP S Y + PP + P+ A P+ Q +IS PP
Sbjct: 402 PSPMELPSPSTVYHQVFYPPTSTSVSSYGLGKTPQPAYGSSSPYVNGHQTQQISSLPP 459
>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 268
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = -2
Query: 669 SQAADESERARKVLENRSLADEERMDALENQLKEARFLAEEADKKYD 529
S +++ +R++L S + E D L + L+ RF+ ++A K Y+
Sbjct: 84 SLGSNQYSISRQLLRQPSFSSSENTDRLADLLRVRRFIYQKAWKSYE 130
>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 501
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = -2
Query: 282 VQKLQKEVDRLEDELVAEKEKYKDIGDDLDTAFVEL 175
+QK +KE +LE++L + KY++ ++ + V+L
Sbjct: 157 IQKAKKEESKLEEDLRNARAKYEESLEEFEDRMVQL 192
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 27.1 bits (57), Expect = 3.0
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 8/98 (8%)
Frame = -3
Query: 401 LWKSQRRRPTNAKRSTKIRSKPSPPV*RRLKHVPSSPSV---PCRNCKRRSIGLKTNLSP 231
L+KS+ + K+ + S SP L H + + P +N +RR+ L+T L P
Sbjct: 322 LFKSEEEKDPVGKQKLPLESSLSP-----LDHSSAEKEMQKAPAKNKRRRTGSLETGLYP 376
Query: 230 KRRNT----RTSETIW-IPPS*SSFSRNKLPLYKDPKS 132
K T R+ +W + S +R K L P+S
Sbjct: 377 KESPTPSKKRSKRVLWSLKHIVSPGNREKHSLNSTPES 414
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 26.6 bits (56), Expect = 3.9
Identities = 19/51 (37%), Positives = 23/51 (45%)
Frame = +3
Query: 552 QRGTWLPSADFRGRPCAPHPPTTCSRAPYVRARIHRRPGWPRTAWRWRSRD 704
+RG + R R +P P SR+PY R RR PR R RS D
Sbjct: 101 ERGGRVHGDSGRLRSRSPSPHEARSRSPYNDERSDRRSMSPRYRSRSRSPD 151
>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 26.6 bits (56), Expect = 3.9
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +1
Query: 145 LYNGSLFLENELYEGGIQIVSDVLVFLLFGDKFVFKP--IDLLLQFLHGTLGELGTCFSL 318
LYN S ++ ++ S + V + +G +FVF+ ID L + LH L +G C L
Sbjct: 499 LYNISRGIDTDIINNETPRRS-ISVDVNWGVRFVFQEDGIDFLKRLLHELLSRMGKCQVL 557
Query: 319 L 321
L
Sbjct: 558 L 558
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = -2
Query: 285 SVQKLQKEVDRLEDELVAEKEKYKDIGDDLDTAFVELILKE 163
+++ KEV ++ + +K+K D DD++ + E +L E
Sbjct: 69 TIESDTKEVQNIKPKSKKKKKKLNDSSDDIEGKYFEELLAE 109
>SPBC947.12 |kms2||spindle pole body protein
Kms2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 25.8 bits (54), Expect = 6.9
Identities = 21/92 (22%), Positives = 38/92 (41%)
Frame = -2
Query: 675 EASQAADESERARKVLENRSLADEERMDALENQLKEARFLAEEADKKYDEVARKLAMVEA 496
+A++ + E+ ++ L R+ E +D+ E K A+ +KK+ E R A
Sbjct: 180 QAAELRSKDEQVKE-LNARNAKLLEELDSSEEACKSCYTQAKTWEKKFREALRDSKEYAA 238
Query: 495 DLXXXXXXXXXXXSKIVELEEELRVVGNNLKS 400
L + IV +EE + V K+
Sbjct: 239 QLQTIHEEYEQQQAHIVRMEELIHAVEKERKT 270
>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 568
Score = 25.4 bits (53), Expect = 9.1
Identities = 17/60 (28%), Positives = 25/60 (41%)
Frame = -3
Query: 395 KSQRRRPTNAKRSTKIRSKPSPPV*RRLKHVPSSPSVPCRNCKRRSIGLKTNLSPKRRNT 216
KS K+S ++ KP V ++ P PS+ K S+ K+ PKR T
Sbjct: 106 KSNGNARKETKQSERVNYKPGMRVLTKMSGFPWWPSMVVTESKMTSVARKS--KPKRAGT 163
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,511,115
Number of Sequences: 5004
Number of extensions: 49494
Number of successful extensions: 253
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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