Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_I15
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    29   0.39 
SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20 |Schizosacc...    25   6.3  
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c...    25   8.3  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    25   8.3  
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    25   8.3  

>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
 Frame = -3

Query: 571 IEMTTFXNTYNETLQCDNMLYLPISVRVNKLPLDPTNYT-FVEESPITSNGSEKTKNEAT 395
           ++ +T    Y  + Q DN + LP   R+    ++PT  T F  +S + S  S  +     
Sbjct: 507 VKDSTLLPPYESSSQGDNQVLLPCPCRLATTHVEPTEVTAFTTQSVLAS--SAPSAGRPA 564

Query: 394 ATIIDRTKFLFKL---NKPQID 338
           A  I R   LF++   N P  D
Sbjct: 565 AAQISRPAQLFRIPSTNPPPFD 586


>SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 290

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
 Frame = -3

Query: 448 EESPITSNGSEKT--KNEATATIIDRTKFLFKLNKPQIDLVAFGIWGRLFLNDFDHSNNE 275
           EE+P+ S   + T  ++      +D TK   K  K Q+DL       + F      SN  
Sbjct: 17  EETPLASKSFDPTLFQHARRKLSVDSTKKSPKRLKRQVDLQKSSFNDKTFNESDVISNER 76

Query: 274 SKSNMLL 254
            KSN LL
Sbjct: 77  FKSNDLL 83


>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 391 TIIDRTKFLFKLNKPQIDLVAFGIWGRLF 305
           TI  R   ++ ++ P +   +FGIWG L+
Sbjct: 105 TIAGRAGAVYHISFPVLSRSSFGIWGSLW 133


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 7/83 (8%)
 Frame = -3

Query: 487 NKLPLDPTNYTFVEESPITSNGSEKTKNEATATIIDRTKFLFKLNKPQIDLVAFGIW--- 317
           N+L  + TN TF++     SN  E    E      + ++ L  LN        + ++   
Sbjct: 632 NRLVFEDTNNTFIDTDSDDSNADESQFLEYANDSPNSSESLESLNNQSYSSSPYSVFSHP 691

Query: 316 ----GRLFLNDFDHSNNESKSNM 260
               GR  LND   +++   SN+
Sbjct: 692 PPYMGRQSLNDSPQTSDFKASNL 714


>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -3

Query: 376 TKFLFKLNKPQIDLVAFGIWGRLFLNDFDHSNNES 272
           TKF F L  P + L    + G   L DFD  +  S
Sbjct: 491 TKFKFDLPVPHLTLFRIFLQGLYALRDFDQISTSS 525


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,134,452
Number of Sequences: 5004
Number of extensions: 37512
Number of successful extensions: 85
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)