Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_I15
         (594 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    31   0.011
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   3.0  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    21   6.9  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   9.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   9.1  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   9.1  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 30.7 bits (66), Expect = 0.011
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 205 ALFSK*LIFKI*CIIMLTAYLICSRYCCDRNHLKTIYPIFRKP 333
           A+ S  + F + CI+ML  Y  C  YC  + H+K+I  + + P
Sbjct: 193 AVVSSSISFYVPCIVMLGIY--CRLYCYAQKHVKSIRAVTKLP 233


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +3

Query: 366 KNFVRSMIVAVASFFVFSLPF 428
           +N +R ++  V +FF+   PF
Sbjct: 281 RNVIRMLVAVVVAFFICWAPF 301


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 265 LICSRYCCDRNHLKT 309
           +IC R  C RN L T
Sbjct: 39  VICERVYCSRNSLMT 53


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/40 (17%), Positives = 19/40 (47%)
 Frame = +3

Query: 318 HIPKATKSICGLFSLNKNFVRSMIVAVASFFVFSLPFDVI 437
           ++P+   + CG    N+  + +  +     +V+ +P  +I
Sbjct: 193 YVPEGNMTACGTDYFNRGLLSASYLVCYGIWVYFVPLFLI 232


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
 Frame = -3

Query: 484 KLPLDPTNYTFVEESPITSN--GSEKTKNEATATIIDRTKFLFKLNKPQID 338
           +L L      + EE    +N  G  +  N      +D T++   L+ PQ+D
Sbjct: 477 QLTLSKVTSNYHEEFQSLNNAVGEMEATNVTNILSMDNTQYNLDLSLPQLD 527


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/40 (17%), Positives = 19/40 (47%)
 Frame = +3

Query: 318 HIPKATKSICGLFSLNKNFVRSMIVAVASFFVFSLPFDVI 437
           ++P+   + CG    N+  + +  +     +V+ +P  +I
Sbjct: 69  YVPEGNMTACGTDYFNRGLLSASYLVCYGIWVYFVPLFLI 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,579
Number of Sequences: 438
Number of extensions: 2490
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)