Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_I12
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    50   3e-07
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    26   6.0  

>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 50.0 bits (114), Expect = 3e-07
 Identities = 36/155 (23%), Positives = 63/155 (40%), Gaps = 3/155 (1%)
 Frame = -3

Query: 701 DCLAELPYLEACMXEAMRLYPVFPNITRETVADYTFPDGLRIDKGMRVHVPVYAIHRNPD 522
           D + ++ Y  A + E +RL P    +       +       + K   V   +Y    +  
Sbjct: 364 DLMEKMTYTRAVVKECLRLRPPVLMVPYRVKKAFPITPDYTVPKDAMVIPTLYGALHDSK 423

Query: 521 NFPDPEEFRPERHLGDAKNDIKQFTFFPFGEGPRICIGMRFGKMQTIAGLITCLKKFNFE 342
            +P+PE F P+R   +   +     +  FG GP +C+G R+     +  LI C+ K +  
Sbjct: 424 VYPEPETFNPDRWAPNGLAEQSPKNWMVFGNGPHVCLGQRY----AVNHLIACIGKASIM 479

Query: 341 LADGMPRTLAFRSTTLL---TQPSTGLFLKATPRD 246
           L D   +      T ++   T P    +LK +P D
Sbjct: 480 L-DWKHKRTPDSDTQMIFATTFPQDMCYLKFSPFD 513


>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 504 FRVRKVVGVTVDSIHRDMHTHTLIY 578
           F + K +G    +IHRD H  T+ Y
Sbjct: 460 FGIAKAIGNDTTNIHRDSHIGTINY 484


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,183,034
Number of Sequences: 5004
Number of extensions: 71538
Number of successful extensions: 180
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)