Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_I09
(600 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyc... 159 3e-40
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 34 0.014
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 29 0.52
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar... 26 4.8
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S... 26 4.8
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 25 6.4
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||... 25 6.4
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual 25 8.5
>SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 126
Score = 159 bits (386), Expect = 3e-40
Identities = 73/122 (59%), Positives = 100/122 (81%)
Frame = -2
Query: 443 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 264
MKF++ VTSSRRK RK HF APS +RRVLMS+PLSKELR+++ ++S+P+R+DD++ V+RG
Sbjct: 1 MKFSRDVTSSRRKQRKAHFGAPSSVRRVLMSAPLSKELREQYKIRSLPVRRDDQITVIRG 60
Query: 263 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILD 84
KG++ GK+ VYRKKF++ IER+ REKANGA+A VGI SK VI KL ++KDRK ++
Sbjct: 61 SNKGRE-GKITSVYRKKFLLLIERVTREKANGASAPVGIDASKVVITKLHLDKDRKDLIV 119
Query: 83 RR 78
R+
Sbjct: 120 RK 121
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 34.3 bits (75), Expect = 0.014
Identities = 20/67 (29%), Positives = 36/67 (53%)
Frame = -1
Query: 558 KGSKNISRQFDILHARNSNLNKVL*INVVFLRCSEERQNEVQQAGDFLKKEKQEEAFQCS 379
KG+ N + F++ +ARN N+NK+ ++ E+ + +G+ L K+++E S
Sbjct: 179 KGNVNDANFFEVEYARNENMNKLSSSELISDDLLEDEIMKPLSSGESLPKKEEEVTKSPS 238
Query: 378 FTYKASV 358
FT SV
Sbjct: 239 FTLDDSV 245
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 29.1 bits (62), Expect = 0.52
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +3
Query: 156 ICCCTIGLFSLNPLNVYNKLFTIHLHHFA---NLLAFVVSTYNLNFIVFANRH 305
+ C +I LFS PL+ N+ F I+L F+ L ++ST + F F RH
Sbjct: 825 LTCISIPLFSFEPLSKKNR-FLINLFRFSFSFILYNLLISTSTVFFAGFFRRH 876
>SPAC22F8.06 |pam1||20S proteasome component beta
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 274 LYVDTTKANRLAK*CRCIVKSLLYTLRGF 188
LY D + A+ C C+V++LLY R F
Sbjct: 78 LYHDNHERKMSAQSCACMVRTLLYGKRFF 106
>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +2
Query: 488 STLFRLLFRACKMSNCRDMFFEPFHQ 565
STL+RLLF KM C E F Q
Sbjct: 45 STLWRLLFELQKMIECEPSCVEYFRQ 70
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.4 bits (53), Expect = 6.4
Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Frame = +1
Query: 22 FPRCIYPXSLPSAASLPFALRSRIALRSLFIFNLTITHFE--G*MPTYAVAPLAFSL*IL 195
FP +YP L + S P AL + L IF L ++E G +P + A L L +
Sbjct: 2090 FPHEVYPLGLIAVFSWPLAL-VMLLFAILLIFGLPDYYWESPGNIPAFYTALLRRKLVLW 2148
Query: 196 SMYTTNFLRYTCITL 240
T Y TL
Sbjct: 2149 FFVATILQNYWLSTL 2163
>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 6.4
Identities = 26/100 (26%), Positives = 43/100 (43%)
Frame = -2
Query: 464 VAAKSDRMKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDD 285
V+A ++ K + TSS ++ P H+ R L SSP S++ + S K
Sbjct: 231 VSATNEANKLSDIQTSSPSQDIPAKHLEPLHLNRSLSSSPSSEDSDLSLSSDSDDDEKKQ 290
Query: 284 EVQVVRGHYKGQQVGKVMQVYRKKFVVYIERIQREKANGA 165
+ + + K ++ RK RI +EKA+GA
Sbjct: 291 PSKSEKTSSMSVSI-KPPKIIRKGSKEQ-NRIAKEKASGA 328
>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 25.0 bits (52), Expect = 8.5
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -2
Query: 461 AAKSDRMKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFN 315
A K+D K V S R+K HF+ + + R+ S S+ ++FN
Sbjct: 262 AIKADLAKLFNLVESQRQKMDSLHFALTNALERLNDISSTSQFPSERFN 310
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,547,555
Number of Sequences: 5004
Number of extensions: 53073
Number of successful extensions: 156
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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