Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_I06
(800 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88308-7|AAB42322.1| 207|Caenorhabditis elegans Ribosomal prote... 191 4e-49
U88308-8|AAO61436.1| 88|Caenorhabditis elegans Ribosomal prote... 94 9e-20
U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical pr... 30 1.7
U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical pr... 30 1.7
U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical pr... 30 1.7
AL023838-4|CAA19504.1| 218|Caenorhabditis elegans Hypothetical ... 29 3.9
Z82083-9|CAB04975.1| 635|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z82083-6|CAB04974.1| 388|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z81503-6|CAB04115.1| 635|Caenorhabditis elegans Hypothetical pr... 29 5.1
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 29 5.1
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 29 5.1
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 29 5.1
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 29 5.1
AC006722-5|AAK68410.3| 703|Caenorhabditis elegans Hypothetical ... 28 6.8
AC006645-10|AAF39849.1| 746|Caenorhabditis elegans Hypothetical... 28 6.8
>U88308-7|AAB42322.1| 207|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 13, isoform a protein.
Length = 207
Score = 191 bits (466), Expect = 4e-49
Identities = 93/201 (46%), Positives = 129/201 (64%), Gaps = 1/201 (0%)
Frame = -1
Query: 656 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXPLRPIVRCPT 477
+GN M+ N HF K W + +KTWF+QPAR+ RR+QNR LR +VRCP
Sbjct: 4 RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQ 63
Query: 476 VRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRAR 297
RY+TK R GRGF+L+E++AAG++ ARTIGIAVD RR NK+ E L+ N R+KEY+A+
Sbjct: 64 KRYNTKTRLGRGFSLQELKAAGISQAQARTIGIAVDVRRTNKTAEGLKANADRLKEYKAK 123
Query: 296 LILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFKAYQYLR 120
LILFP K KG+++ EE K+A QLRG ++P+ R +T+ E+ + ++ LR
Sbjct: 124 LILFPKKASAPKKGDSSAEELKVAAQLRGDVLPLSHTITFDEPRQVTDAERKVEIFRLLR 183
Query: 119 GARSIAKLVGIRAKRLKDAAE 57
R+ K G R KR ++AAE
Sbjct: 184 KERADKKYRGKREKRAREAAE 204
>U88308-8|AAO61436.1| 88|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 13, isoform b protein.
Length = 88
Score = 94.3 bits (224), Expect = 9e-20
Identities = 41/84 (48%), Positives = 54/84 (64%)
Frame = -1
Query: 656 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXPLRPIVRCPT 477
+GN M+ N HF K W + +KTWF+QPAR+ RR+QNR LR +VRCP
Sbjct: 4 RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQ 63
Query: 476 VRYHTKVRAGRGFTLREIRAAGLN 405
RY+TK R GRGF+L+E++AA N
Sbjct: 64 KRYNTKTRLGRGFSLQELKAAEEN 87
>U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical protein
F13B9.1c protein.
Length = 1609
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = -1
Query: 293 ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFK 138
++F K VLK + + A +GPL+P Q AP +V IT+ +N K
Sbjct: 879 VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 929
>U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical protein
F13B9.1b protein.
Length = 1614
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = -1
Query: 293 ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFK 138
++F K VLK + + A +GPL+P Q AP +V IT+ +N K
Sbjct: 879 VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 929
>U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical protein
F13B9.1a protein.
Length = 1632
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = -1
Query: 293 ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFK 138
++F K VLK + + A +GPL+P Q AP +V IT+ +N K
Sbjct: 901 VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 951
>AL023838-4|CAA19504.1| 218|Caenorhabditis elegans Hypothetical
protein Y43C5A.4 protein.
Length = 218
Score = 29.1 bits (62), Expect = 3.9
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Frame = -1
Query: 284 PKGKKVLKGEANEEERKLATQLRG-PLMPVQQPAPKSVARPITEDEKNFKAYQYLRGARS 108
PKGKK K ++ E+++ + R PV+ + EDEK + + ++
Sbjct: 43 PKGKKKKKLSSSHEKKRSENKARNNKKKPVELDTTDEAKSTVNEDEKEKSSKRPTAKSKK 102
Query: 107 IAKLVGIRAKRLKDAAENPDDVTK 36
K G + K K + PD K
Sbjct: 103 SKKATGSKKKNKK--TKKPDGSEK 124
>Z82083-9|CAB04975.1| 635|Caenorhabditis elegans Hypothetical
protein ZK1010.9 protein.
Length = 635
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +3
Query: 132 ISFEVLFIFSDRSCN*FRSRLLNWH*WTT*LCSQLTFFFIGLTL 263
IS E++ I + SC R L H W T + TFF +GL +
Sbjct: 398 ISTEIVIIETVCSCLADRFHYLRQHRWITVVTVSTTFFLLGLVM 441
>Z82083-6|CAB04974.1| 388|Caenorhabditis elegans Hypothetical
protein ZK1010.8 protein.
Length = 388
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Frame = +1
Query: 520 RGAT-ALAFF-ILFCFLRYRRAGWLNQVLTNL 609
RGAT A+A + I++CF+++ GW QV+ N+
Sbjct: 9 RGATIAIAVWNIIYCFIQFGILGWQFQVVKNI 40
>Z81503-6|CAB04115.1| 635|Caenorhabditis elegans Hypothetical
protein ZK1010.9 protein.
Length = 635
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +3
Query: 132 ISFEVLFIFSDRSCN*FRSRLLNWH*WTT*LCSQLTFFFIGLTL 263
IS E++ I + SC R L H W T + TFF +GL +
Sbjct: 398 ISTEIVIIETVCSCLADRFHYLRQHRWITVVTVSTTFFLLGLVM 441
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 28.7 bits (61), Expect = 5.1
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = -1
Query: 212 PLMPVQ-QPAPKSVARPITEDEKNFKAYQYLRGARSIAKLVGIRAKRLKDAA-ENPDDVT 39
P P + + +P+ A P + E K+ + +S K V K K+ + E DD
Sbjct: 1574 PASPTKKEKSPEKPASPTKKSENEVKSPT--KKEKSPEKSVVEELKSPKEKSPEKADDKP 1631
Query: 38 KAPTXKEVKPKK 3
K+PT KE P+K
Sbjct: 1632 KSPTKKEKSPEK 1643
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 28.7 bits (61), Expect = 5.1
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = -1
Query: 212 PLMPVQ-QPAPKSVARPITEDEKNFKAYQYLRGARSIAKLVGIRAKRLKDAA-ENPDDVT 39
P P + + +P+ A P + E K+ + +S K V K K+ + E DD
Sbjct: 1574 PASPTKKEKSPEKPASPTKKSENEVKSPT--KKEKSPEKSVVEELKSPKEKSPEKADDKP 1631
Query: 38 KAPTXKEVKPKK 3
K+PT KE P+K
Sbjct: 1632 KSPTKKEKSPEK 1643
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 28.7 bits (61), Expect = 5.1
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = -1
Query: 212 PLMPVQ-QPAPKSVARPITEDEKNFKAYQYLRGARSIAKLVGIRAKRLKDAA-ENPDDVT 39
P P + + +P+ A P + E K+ + +S K V K K+ + E DD
Sbjct: 1574 PASPTKKEKSPEKPASPTKKSENEVKSPT--KKEKSPEKSVVEELKSPKEKSPEKADDKP 1631
Query: 38 KAPTXKEVKPKK 3
K+PT KE P+K
Sbjct: 1632 KSPTKKEKSPEK 1643
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 28.7 bits (61), Expect = 5.1
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = -1
Query: 212 PLMPVQ-QPAPKSVARPITEDEKNFKAYQYLRGARSIAKLVGIRAKRLKDAA-ENPDDVT 39
P P + + +P+ A P + E K+ + +S K V K K+ + E DD
Sbjct: 1574 PASPTKKEKSPEKPASPTKKSENEVKSPT--KKEKSPEKSVVEELKSPKEKSPEKADDKP 1631
Query: 38 KAPTXKEVKPKK 3
K+PT KE P+K
Sbjct: 1632 KSPTKKEKSPEK 1643
>AC006722-5|AAK68410.3| 703|Caenorhabditis elegans Hypothetical
protein Y19D10A.10 protein.
Length = 703
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 686 NSTKIXIXVLTTPCTLFLKNNSLLF 760
N T++ I +LT C F++ N+LLF
Sbjct: 273 NKTRMFIMILTLACLTFIQINTLLF 297
>AC006645-10|AAF39849.1| 746|Caenorhabditis elegans Hypothetical
protein F56A4.11 protein.
Length = 746
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 686 NSTKIXIXVLTTPCTLFLKNNSLLF 760
N T++ I +LT C F++ N+LLF
Sbjct: 316 NKTRMFIMILTLACLTFIQINTLLF 340
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,932,890
Number of Sequences: 27780
Number of extensions: 349328
Number of successful extensions: 894
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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