Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_I01
         (742 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025468-6|AAB71043.2|  283|Caenorhabditis elegans Hypothetical ...    29   4.6  
Z82055-3|CAB04845.1|  385|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U39999-1|AAK93855.1|  277|Caenorhabditis elegans Hypothetical pr...    28   8.0  

>AF025468-6|AAB71043.2|  283|Caenorhabditis elegans Hypothetical
           protein T27A1.2 protein.
          Length = 283

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 71  YYIGKNIHVMKQFDLAFGWYYEFTDTYCD 157
           Y+   N+  +++F L + W YE+TD  CD
Sbjct: 186 YWFAGNMSKLRRFQLNY-WPYEWTDDLCD 213


>Z82055-3|CAB04845.1|  385|Caenorhabditis elegans Hypothetical
           protein T26H2.3 protein.
          Length = 385

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 485 YNNIIALVFC*PKMKKLVKLALILPKASFTFIKATIILV 601
           Y N+IA+ FC  + K +V+ A +L    F  I +T I +
Sbjct: 25  YVNLIAISFCSQRSKSIVESAKLLHAIEFIIILSTHIRI 63


>U39999-1|AAK93855.1|  277|Caenorhabditis elegans Hypothetical
           protein F41G3.14 protein.
          Length = 277

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 12/83 (14%)
 Frame = -1

Query: 217 LMQCAFGIIANSLKSKKTAV---------ITIC--ICKLIVPTKC*VKLFHNMNIFTNV- 74
           LM C+FGI  +    KK+ V         I++C   C +IV     + +      F++  
Sbjct: 194 LMCCSFGIFVDVNSDKKSEVLLLSPTLEAISVCRATCSVIVGKDDHMVMVRERGQFSSFS 253

Query: 73  ILAKINQITLKRCHLFKNSVPHI 5
           +L K+ QIT +R H F  S+ ++
Sbjct: 254 LLKKMCQITAERRHKFVESLQNV 276


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,027,143
Number of Sequences: 27780
Number of extensions: 291470
Number of successful extensions: 578
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)