Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_H22
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    28   1.3  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     25   7.1  
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual        25   9.4  
SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         25   9.4  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    25   9.4  

>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 19/60 (31%), Positives = 27/60 (45%)
 Frame = -2

Query: 266 LCNIIAKRNTLITFKLNNELSIETVIFQNTVYCVXYNVNQI**LDYLLCRSTEQKLNCCD 87
           +C+II +  TL+ + L+     ET I  N  Y V         L  +L  S E KL  C+
Sbjct: 233 ICSIIVENTTLVEWLLSRSSVDETSISTNLQYAVEI-------LAIILANSKEAKLKVCN 285


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +1

Query: 13  FCAYPQFSVCMRVTQVF--SNFXFTIASQQFNFCSVDR 120
           F   PQ S+CM +  VF   N   T+ +Q F F + ++
Sbjct: 696 FAFLPQLSLCMLIPLVFGKKNLPGTLFAQTFAFVTFNK 733


>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 165 DAINCILKYNCFNGQFIVKLESY 233
           + I C  K NC+N   I  LE+Y
Sbjct: 305 ETIRCNKKSNCYNWNGIAALETY 327


>SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = -2

Query: 254 IAKRNTLITFKLNNELSIETVIFQNTVY 171
           + K+N L+T + ++ +SI+ + F N +Y
Sbjct: 15  LLKKNFLLTIRFSSLVSIQYIPFSNRLY 42


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 174 NCILKYNCFNGQFIVKLESYKGVSFCYDITKRELIILI 287
           NC+ K    + Q  + L+   G S C +IT   +II I
Sbjct: 247 NCMKKTRYLHDQEFMHLDIDTGFSMCKEITNVAIIISI 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,226,454
Number of Sequences: 5004
Number of extensions: 39389
Number of successful extensions: 58
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)