Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_H20
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    27   1.6  
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    26   4.8  

>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +2

Query: 146 GNNLILTL*VGS-YR*YMCHKLK--FVAP*LDKTILCKQLFK 262
           G + ++T  VG+ ++ Y C KL   FV   LDK I C + FK
Sbjct: 45  GTHFLVTTSVGNTFQTYDCEKLNLLFVGKQLDKEITCLKSFK 86


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 488 DIVENVHLGVLSEQCIIGRPNSFKFPIVSR 577
           D +    L +L +Q I+ R N F FP +S+
Sbjct: 228 DNLSEEELDLLYKQLILSRENDFTFPYISQ 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,891,717
Number of Sequences: 5004
Number of extensions: 30179
Number of successful extensions: 69
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)